Evidence map›Paper›PMID 36714753›Full record

ArticleFrontiers in plant science2022

Systematic analysis of photo/sko-regulated germination and post-germination development of shallow photodormant seeds in

Qiyuan Liu, Zhenhua Li, Min Zhang, Shuai Dong, Pingping Yang, Jie Zhang, Eddison Loades

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Qiyuan LiuCollege of Agriculture, University of Guizhou, Guiyang, Guizhou, China.
Zhenhua LiCollege of Agriculture, University of Guizhou, Guiyang, Guizhou, China.
Min ZhangCollege of Agriculture, University of Guizhou, Guiyang, Guizhou, China.
Shuai DongCollege of Agriculture, University of Guizhou, Guiyang, Guizhou, China.
Pingping YangCollege of Agriculture, University of Guizhou, Guiyang, Guizhou, China.
Jie ZhangChina National Tobacco Corporation (CNTC) Key Laboratory of Molecular Genetics, Guizhou Academy of Tobacco Science, Guiyang, Guizhou, China.
Eddison LoadesDepartment of Biological Sciences, Royal Holloway, University of London, London, United Kingdom.
Guizhou University · CNRoyal Holloway University of London · GBTobacco Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Light is a major environmental factor in regulating germination and post-germination development of shallow photo-dormant seeds in Methods and results: In this study, we compared the phenotypes of the seeds germinated under light and dark, and systematically investigated their regulatory networks by integrating transcriptomic and proteomic data. Under light, the germination increased ~25%, the length of the hypocotyl shortened ~3 cm, and the apical hook disappeared. 9, 161, 342 differentially expressed genes (DEGs) and 128, 185, 81 differentially expressed proteins (DEPs) were regulated by light in the development stage of seed imbibition, radicle protrusion and cotyledon expansion respectively. 0, 19 and 1 co-up-regulated and 1, 30 and 64 co-down-regulated DEGs (DEP) were observed in the three stages, respectively. Of them, 2S albumin large chain, was down-regulated by light in imbibed seed. Oleosin 18.5 kDa (OLEO1) and Glyceraldehyde-3-phosphate dehydrogenase (GAPA1), Oxygen-evolving enhancer protein 1-1 and anchloroplastic (PSBO1), hub genes (proteins) in protein-protein interaction network (PPI), were downregulated and up-regulated in germinated seeds by light, respectively. OLEO1, a hub gene (proteins), was down-regulated by light in post-germination seedling. Conclusion: These results systematically revealed the molecular networks regulated by light during germination and post-germination development of shallow photo-dormant tobacco seeds.

Indexed as

cotyledon expansionimbibitionproteomeradicle protrusionseed germinationtranscriptome

Identifiers

PMID36714753
PMCPMC9875545
OpenAlexW4313584781

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.