Evidence map›Paper›PMID 36713977›Full record

ArticleJournal of Raman spectroscopy : JRS2023

SARS-CoV-2 severity classification from plasma sample using confocal Raman spectroscopy.

Arghya Banerjee, Ankit Halder, Priyanka Jadhav, Anushka Sarkar, Arti Hole, Jayanthi S Shastri, Sachee Agrawal, Murali Krishna Chilakapati, Sanjeeva Srivastava

Open access · greenAbstract read
In one paragraph

Article in Journal of Raman spectroscopy : JRS, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Arghya BanerjeeDepartment of Biosciences and Bioengineering Indian Institute of Technology Bombay Mumbai India.ORCID https://orcid.org/0000-0002-0043-5827
Ankit HalderDepartment of Biosciences and Bioengineering Indian Institute of Technology Bombay Mumbai India.
Priyanka JadhavAdvanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre (TMC) Navi Mumbai India.ORCID https://orcid.org/0000-0002-0249-9242
Anushka SarkarDepartment of Life Sciences Presidency University (Main Campus) Kolkata India.ORCID https://orcid.org/0000-0002-9174-3736
Arti HoleAdvanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre (TMC) Navi Mumbai India.
Jayanthi S ShastriKasturba Hospital for Infectious Diseases Mumbai India.
Sachee AgrawalKasturba Hospital for Infectious Diseases Mumbai India.
Murali Krishna ChilakapatiAdvanced Centre for Treatment Research and Education in Cancer (ACTREC) Tata Memorial Centre (TMC) Navi Mumbai India.
Sanjeeva SrivastavaDepartment of Biosciences and Bioengineering Indian Institute of Technology Bombay Mumbai India.ORCID https://orcid.org/0000-0001-5159-6834
Indian Institute of Technology Bombay · INKasturba Hospital · INTata Memorial Hospital · INHomi Bhabha National Institute · INPresidency University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The world is on the brink of facing coronavirus's (COVID-19) fourth wave as the mutant forms of viruses are escaping neutralizing antibodies in spite of being vaccinated. As we have already witnessed that it has encumbered our health system, with hospitals swamped with infected patients observed during the viral outbreak. Rapid triage of patients infected with SARS-CoV-2 is required during hospitalization to prioritize and provide the best point of care. Traditional diagnostics techniques such as RT-PCR and clinical parameters such as symptoms, comorbidities, sex and age are not enough to identify the severity of patients. Here, we investigated the potential of confocal Raman microspectroscopy as a powerful tool to generate an expeditious blood-based test for the classification of COVID-19 disease severity using 65 patients plasma samples from cohorts infected with SARS-CoV-2. We designed an easy manageable blood test where we used a small volume (8 μl) of inactivated whole plasma samples from infected patients without any extra solvent usage in plasma processing. Raman spectra of plasma samples were acquired and multivariate exploratory analysis PC-LDA (principal component based linear discriminant analysis) was used to build a model, which segregated the severe from the non-severe COVID-19 group with a sensitivity of 83.87%, specificity of 70.60% and classification efficiency of 76.92%. Among the bands expressed in both the cohorts, the study led to the identification of Raman fingerprint regions corresponding to lipids (1661, 1742), proteins amide I and amide III (1555, 1247), proteins (Phe) (1006, 1034), and nucleic acids (760) to be differentially expressed in severe COVID-19 patient's samples. In summary, the current study exhibits the potential of confocal Raman to generate simple, rapid, and less expensive blood tests to triage the severity of patients infected with SARS-CoV-2.

Indexed as

confocal Raman spectroscopyplasmaprincipal component‐based linear discriminant analysis (PC‐LDA)SARS‐CoV‐2severe and non‐severe SARS‐CoV‐2 patients

Identifiers

PMID36713977
PMCPMC9874663
OpenAlexW4304845521

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.