Evidence map›Paper›PMID 36713571›Full record

ArticleFrontiers in oncology2022

Development of anoikis-related genes signature to predict the prognosis in gastric cancer patients.

Jie Cao, Kai Hong, Yuepeng Cao, Kenan Cen, Yifeng Mai, Ying Dai, Guifang Ouyang, Qitian Mu, Yangyang Guo

Abstract read
In one paragraph

Article in Frontiers in oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Jie CaoLaboratory of Stem Cell Transplantation, Ningbo First Hospital, Ningbo, China.
Kai HongDepartment of General Surgery, Ningbo First Hospital, Ningbo, China.
Yuepeng CaoDepartment of General Surgery, Ningbo First Hospital, Ningbo, China.
Kenan CenThe Affiliated Hospital of Medical School of Ningbo University, Ningbo, China.
Yifeng MaiThe Affiliated Hospital of Medical School of Ningbo University, Ningbo, China.
Ying DaiThe Affiliated Hospital of Medical School of Ningbo University, Ningbo, China.
Guifang OuyangDepartment of Hematology, Ningbo First Hospital, Ningbo, China.
Qitian MuLaboratory of Stem Cell Transplantation, Ningbo First Hospital, Ningbo, China.
Yangyang GuoLaboratory of Stem Cell Transplantation, Ningbo First Hospital, Ningbo, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: It is well known that the prognosis of Gastric cancer (GC) patient is affected by many factors. However, the latent impact of anoikis on the prognosis of GC patients is insufficient understood. Methods: According to the Cancer Genome Atlas (TCGA) database, we elected discrepantly expressed anoikis-related genes (ARGs). Univariate cox and the least absolute shrinkage and selection operator (lasso) analysis were applied to build the ARGs signature. The prognostic effect of the ARGs signature was also evaluated. A series of algorithms were performed to evaluate the discrepancies in the immune microenvironment. Moreover, the correlation between drug sensitivity and ARGs signature was analyzed. We also performed Real-Time Polymerase Chain Reaction (RT-PCR) to probe the signature. Results: The ARGs signature of 9 genes was constructed, which was apparently interrelated with the prognosis. The nomogram was established by combining the ARGs signature with clinicopathological characteristics. We found that the predictive power was noteworthily superior to other individual predictors. The immune microenvironment analysis indicated that ESTIMATEscore, ImmuneScores, StromalScores, tumor immune dysfunction and exclusion (TIDE) score were lower in the low-risk group, while immunophenoscore (IPS) was on the contrary. The infiltrated immune cells and immune checkpoint (ICP) expression levels were significantly different between the two groups. Furthermore, nine drugs were positively associated with the ARGs signature score. The results of RT-PCR analysis were consistent with our previous differential expression analysis. Conclusion: The developed ARGs signature could act as the biomarker and provide a momentous reference for Individual therapy of GC patients.

Indexed as

anoikisgastric cancerimmune microenvironmentimmunotherapyprognosis

Identifiers

PMID36713571
PMCPMC9878391

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.