Evidence map›Paper›PMID 36707901›Full record

ArticleActa neuropathologica communications2023

Lack of a protective effect of the Tmem106b "protective SNP" in the Grn knockout mouse model for frontotemporal lobar degeneration.

Anne-Sophie Cabron, Uwe Borgmeyer, Julia Richter, Helga Peisker, Katharina Gutbrod, Peter Dörmann, Anja Capell, Markus Damme

Open access · goldAbstract read
In one paragraph

Article in Acta neuropathologica communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
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  8. A 3'UTR Insertion Is a Candidate Causal Variant at themedRxiv : the preprint server for health sciences · 2023
    Article
  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Anne-Sophie CabronInstitute of Biochemistry, Christian-Albrechts-University Kiel, Olshausenstr. 40, 24098, Kiel, Germany.
Uwe BorgmeyerCenter for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID 0000-0003-3727-4083
Julia RichterDepartment of Pathology, Hematopathology Section, University Hospital Schleswig-Holstein, Kiel, Germany.
Helga PeiskerInstitute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Bonn, Germany.
Katharina GutbrodInstitute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Bonn, Germany.
Peter DörmannInstitute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, Bonn, Germany.ORCID 0000-0002-5845-9370
Anja CapellDivision of Metabolic Biochemistry, Biomedical Center (BMC), Faculty of Medicine, Ludwig-Maximilians-Universität München, 81377, Munich, Germany.ORCID 0000-0003-3118-911X
Markus DammeInstitute of Biochemistry, Christian-Albrechts-University Kiel, Olshausenstr. 40, 24098, Kiel, Germany. mdamme@biochem.uni-kiel.de.ORCID 0000-0002-9699-9351
University of Bonn · DEChristian-Albrechts-Universität zu Kiel · DELudwig-Maximilians-Universität München · DEUniversität Hamburg · DEUniversity Hospital Schleswig-Holstein · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic variants in TMEM106B are a common risk factor for frontotemporal lobar degeneration and the most important modifier of disease risk in patients with progranulin (GRN) mutations (FTLD-GRN). TMEM106B is encoding a lysosomal transmembrane protein of unknown molecular function. How it mediates its disease-modifying function remains enigmatic. Several TMEM106B single nucleotide polymorphisms (SNPs) are significantly associated with disease risk in FTLD-GRN carriers, of which all except one are within intronic sequences of TMEM106B. Of note, the non-coding SNPs are in high linkage disequilibrium with the coding SNP rs3173615 located in exon six of TMEM106B, resulting in a threonine to serine change at amino acid 185 in the minor allele, which is protective in FTLD-GRN carriers. To investigate the functional consequences of this variant in vivo, we generated and characterized a knockin mouse model harboring the Tmem106b

Indexed as

Frontotemporal DementiaFrontotemporal Lobar DegenerationAmino AcidsAnimalsIntercellular Signaling Peptides and ProteinsMembrane ProteinsMiceMice, KnockoutMutationNerve Tissue ProteinsPolymorphism, Single NucleotideAmino AcidsIntercellular Signaling Peptides and ProteinsMembrane ProteinsNerve Tissue ProteinsTmem106b protein, mouseFTLDProgranulinProtective SNPTMEM106B

Identifiers

PMID36707901
PMCPMC9881268
OpenAlexW4318200629

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.