Evidence map›Paper›PMID 36707613›Full record

ArticleThe ISME journal2023

Ubiquitous occurrence of a dimethylsulfoniopropionate ABC transporter in abundant marine bacteria.

Chun-Yang Li, Michaela A Mausz, Andrew Murphy, Nan Zhang, Xiu-Lan Chen, Shu-Yan Wang, Chao Gao, María M Aguilo-Ferretjans, Eleonora Silvano, Ian D E A Lidbury and 4 more

Open access · hybridFull text read
In one paragraph

Article in The ISME journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

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  7. Pathway crosstalk enables degradation of aromatic compounds in marineApplied and environmental microbiology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Chun-Yang Li *Frontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China. Lcy@ouc.edu.cn.ORCID 0000-0002-1151-4897
Michaela A Mausz *School of Life Sciences, University of Warwick, CV4 7AL, Coventry, UK.ORCID 0000-0002-5702-3110
Andrew Murphy *School of Life Sciences, University of Warwick, CV4 7AL, Coventry, UK.
Nan Zhang *School of Bioengineering, Qilu University of Technology, Jinan, China.
Xiu-Lan ChenState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, China.ORCID 0000-0003-2991-3631
Shu-Yan WangFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China.
Chao GaoState Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, China.
María M Aguilo-FerretjansSchool of Life Sciences, University of Warwick, CV4 7AL, Coventry, UK.ORCID 0000-0001-8455-7153
Eleonora SilvanoSchool of Life Sciences, University of Warwick, CV4 7AL, Coventry, UK.
Ian D E A LidburyPlants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK.ORCID 0000-0001-7190-315X
Hui-Hui FuFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China.
Jonathan D ToddSchool of Biological Sciences, University of East Anglia, NR4 7TJ, Norwich, UK.ORCID 0000-0003-0777-9312
Yin ChenFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China. Y.Chen.25@warwick.ac.uk.ORCID 0000-0002-0367-4276
Yu-Zhong ZhangFrontiers Science Center for Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao, China. zhangyz@sdu.edu.cn.ORCID 0000-0002-2017-1005
University of Warwick · GBShandong University · CNOcean University of China · CNQilu University of Technology · CNUniversity of East Anglia · GBUniversity of Sheffield · GB

Funding

Biotechnology and Biological Sciences Research Council BB/T009152/1
6 · The paper itself

Abstract

Dimethylsulfoniopropionate (DMSP) is a ubiquitous organosulfur compound in marine environments with important functions in both microorganisms and global biogeochemical carbon and sulfur cycling. The SAR11 clade and marine Roseobacter group (MRG) represent two major groups of heterotrophic bacteria in Earth's surface oceans, which can accumulate DMSP to high millimolar intracellular concentrations. However, few studies have investigated how SAR11 and MRG bacteria import DMSP. Here, through comparative genomics analyses, genetic manipulations, and biochemical analyses, we identified an ABC (ATP-binding cassette)-type DMSP-specific transporter, DmpXWV, in Ruegeria pomeroyi DSS-3, a model strain of the MRG. Mutagenesis suggested that DmpXWV is a key transporter responsible for DMSP uptake in strain DSS-3. DmpX, the substrate binding protein of DmpXWV, had high specificity and binding affinity towards DMSP. Furthermore, the DmpX DMSP-binding mechanism was elucidated from structural analysis. DmpX proteins are prevalent in the numerous cosmopolitan marine bacteria outside the SAR11 clade and the MRG, and dmpX transcription was consistently high across Earth's entire global ocean. Therefore, DmpXWV likely enables pelagic marine bacteria to efficiently import DMSP from seawater. This study offers a new understanding of DMSP transport into marine bacteria and provides novel insights into the environmental adaption of marine bacteria.

Indexed as

ATP-Binding Cassette TransportersSulfonium CompoundsOceans and SeasSeawaterATP-Binding Cassette TransportersdimethylpropiothetinSulfonium Compounds

Identifiers

PMID36707613
PMCPMC10030565
OpenAlexW4318215358

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read35
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.