Evidence map›Paper›PMID 36706738›Full record

ReviewTrends in immunology2023

Locus architecture and RAG scanning determine antibody diversity.

Amy L Kenter, Saurabh Priyadarshi, Ellen B Drake

Open access · greenAbstract readReview
In one paragraph

Review in Trends in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Amy L KenterDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL 60612-7344, USA. Electronic address: star1@uic.edu.
Saurabh PriyadarshiDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL 60612-7344, USA.
Ellen B DrakeDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL 60612-7344, USA.
Illinois College · USUniversity of Illinois Urbana-Champaign · US

Funding

Chromatin infrastructure of the Igh locus and its influence on VH gene usageR01AI121286 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2016 to 2020
$4.2M
Analysis of Mbd4 function during the generation of Ig diversityR21AI133050 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2017 to 2018
$440k
Igh locus function in immunosenescent miceR21AI159626 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2021 to 2022
$429k
NIAID NIH HHS R01 AI121286NIAID NIH HHS R21 AI133050NIAID NIH HHS R21 AI159626
6 · The paper itself

Abstract

Diverse mammalian antibody repertoires are produced via distant genomic contacts involving immunoglobulin Igh variable (V), diversity (D), and joining (J) gene segments and result in V(D)J recombination. How such interactions determine V gene usage remains unclear. The recombination-activating gene (RAG) chromatin scanning model posits that RAG recombinase bound to the recombination center (RC) linearly tracks along chromatin by means of cohesin-mediated loop extrusion; a proposition supported by cohesin depletion studies. A mechanistic role for chromatin loop extrusion has also been implicated for Igh locus contraction. In this opinion, we provide perspective on how loop extrusion interfaces with the 3D conformation of the Igh locus and newly identified enhancers that regionally regulate V

Indexed as

Antibody DiversityV(D)J RecombinationAnimalsChromatinHumansMammalsChromatinIgh enhancersIgh repertoirelocus conformationloop extrusion

Identifiers

PMID36706738
PMCPMC10128066
OpenAlexW4318070713

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.