Evidence map›Paper›PMID 36706638›Full record

ArticleMedical image analysis2023

Superficial white matter analysis: An efficient point-cloud-based deep learning framework with supervised contrastive learning for consistent tractography parcellation across populations and dMRI acquisitions.

Tengfei Xue, Fan Zhang, Chaoyi Zhang, Yuqian Chen, Yang Song, Alexandra J Golby, Nikos Makris, Yogesh Rathi, Weidong Cai, Lauren J O'Donnell

Abstract read
In one paragraph

Article in Medical image analysis, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Advances in artificial intelligence for neuroimaging.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2026
    Review
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  8. Review
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  12. Article
  13. Surface-based and Shape-informed U-fiber Atlasing for Robust Superficial White Matter Connectivity Analysis.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Diffusion MRI with Machine Learning.Imaging neuroscience (Cambridge, Mass.) · 2024
    Article
  20. Multimodal Neuroimaging Computing: Basics and Applications in Neurosurgery.Advances in experimental medicine and biology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tengfei XueBrigham and Women's Hospital, Harvard Medical School, Boston, USA; School of Computer Science, University of Sydney, Sydney, Australia.
Fan ZhangBrigham and Women's Hospital, Harvard Medical School, Boston, USA. Electronic address: fzhang@bwh.harvard.edu.
Chaoyi ZhangSchool of Computer Science, University of Sydney, Sydney, Australia.
Yuqian ChenBrigham and Women's Hospital, Harvard Medical School, Boston, USA; School of Computer Science, University of Sydney, Sydney, Australia.
Yang SongSchool of Computer Science and Engineering, University of New South Wales, Sydney, Australia.
Alexandra J GolbyBrigham and Women's Hospital, Harvard Medical School, Boston, USA.
Nikos MakrisBrigham and Women's Hospital, Harvard Medical School, Boston, USA; Center for Morphometric Analysis, Massachusetts General Hospital, Boston, USA.
Yogesh RathiBrigham and Women's Hospital, Harvard Medical School, Boston, USA.
Weidong CaiSchool of Computer Science, University of Sydney, Sydney, Australia.
Lauren J O'DonnellBrigham and Women's Hospital, Harvard Medical School, Boston, USA. Electronic address: odonnell@bwh.harvard.edu.

Funding

Training and DisseminationP41EB015902 · NIBIB · BRIGHAM AND WOMEN'S HOSPITAL · PI KIKINIS, RON, WESTIN, CARL-FREDRIK · 2012 to 2022
$20.9M
Novel DT-MRI Analyses of White Matter in SchizophreniaR01MH074794 · NIMH · BRIGHAM AND WOMEN'S HOSPITAL · PI WESTIN, CARL-FREDRIK · 2007 to 2021
$9.6M
Mapping the superficial white matter connectome of the human brain using ultra high resolution multi-contrast diffusion MRIR01MH125860 · NIMH · BRIGHAM AND WOMEN'S HOSPITAL · PI MAKRIS, NIKOLAOS, O'DONNELL, LAUREN JEAN · 2021 to 2025
$4.1M
Harmonizing multi-site diffusion MRI acquisitions for neuroscientific analysis across ages and brain disordersR01MH119222 · NIMH · BRIGHAM AND WOMEN'S HOSPITAL · PI O'DONNELL, LAUREN JEAN, RATHI, YOGESH · 2019 to 2023
$4.0M
Quantitative Glioblastoma Margin and Infiltration Mapping with Advanced Diffusion-Relaxation MRIR01NS125781 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI ALEXANDRA J GOLBY, Carl-Fredrik Westin · 2022 to 2026
$3.6M
Unraveling the Superficial White Matter of the Primate Brain: Tracer-Based Histology and dMRI Tractography ValidationR01NS125307 · NINDS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI NIKOLAOS MAKRIS, RICHARD Jarrett RUSHMORE · 2022 to 2026
$3.4M
Mentoring and neuroimaging research on new targets for DBS in OCDK24MH116366 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI MAKRIS, NIKOLAOS · 2018 to 2022
$817k
NIBIB NIH HHS P41 EB015902NIMH NIH HHS K24 MH116366NIMH NIH HHS R01 MH074794NIMH NIH HHS R01 MH119222NIMH NIH HHS R01 MH125860NINDS NIH HHS R01 NS125307NINDS NIH HHS R01 NS125781
6 · The paper itself

Abstract

Diffusion MRI tractography is an advanced imaging technique that enables in vivo mapping of the brain's white matter connections. White matter parcellation classifies tractography streamlines into clusters or anatomically meaningful tracts. It enables quantification and visualization of whole-brain tractography. Currently, most parcellation methods focus on the deep white matter (DWM), whereas fewer methods address the superficial white matter (SWM) due to its complexity. We propose a novel two-stage deep-learning-based framework, Superficial White Matter Analysis (SupWMA), that performs an efficient and consistent parcellation of 198 SWM clusters from whole-brain tractography. A point-cloud-based network is adapted to our SWM parcellation task, and supervised contrastive learning enables more discriminative representations between plausible streamlines and outliers for SWM. We train our model on a large-scale tractography dataset including streamline samples from labeled long- and medium-range (over 40 mm) SWM clusters and anatomically implausible streamline samples, and we perform testing on six independently acquired datasets of different ages and health conditions (including neonates and patients with space-occupying brain tumors). Compared to several state-of-the-art methods, SupWMA obtains highly consistent and accurate SWM parcellation results on all datasets, showing good generalization across the lifespan in health and disease. In addition, the computational speed of SupWMA is much faster than other methods.

Indexed as

Deep LearningWhite MatterBrainCloud ComputingDiffusion Tensor ImagingHumansImage Processing, Computer-AssistedInfant, NewbornDeep learningDiffusion MRIPoint cloudSuperficial white matter parcellationSupervised contrastive learningTractography

Identifiers

PMID36706638
PMCPMC9975054

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.