Evidence map›Paper›PMID 36706161›Full record

ArticlePLoS pathogens2023

A modular CRISPR screen identifies individual and combination pathways contributing to HIV-1 latency.

Emily Hsieh, Derek H Janssens, Patrick J Paddison, Edward P Browne, Steve Henikoff, Molly OhAinle, Michael Emerman

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. CypA is a molecular barrier to HIV emergence from Eastern chimpanzees.bioRxiv : the preprint server for biology · 2026
    Article
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  14. Review
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  17. A CRISPR screen of HIV dependency factors revealsbioRxiv : the preprint server for biology · 2023
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Emily HsiehMolecular and Cellular Biology Graduate Program, University of Washington, Seattle, Washington, United States of America.
Derek H JanssensDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Patrick J PaddisonDivision of Human Biology, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Edward P BrowneDivision of Infectious Diseases, Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America.
Steve HenikoffDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Molly OhAinleDivision of Human Biology, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Michael EmermanDivision of Basic Sciences, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.ORCID 0000-0002-4181-6335
Fred Hutch Cancer Center · USHoward Hughes Medical Institute · USUniversity of North Carolina at Chapel Hill · USUniversity of Washington · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Project 3U54AI170792 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Nevan J Krogan · 2022 to 2026
$35.7M
CHEETAH Center for the Structural Biology of HIV Infection, Restriction, and Viral DynamicsU54AI170856 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI WALTHER H MOTHES · 2022 to 2026
$34.4M
Collaboratory of AIDS Researchers for Eradication (CARE)UM1AI164567 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVID M. MARGOLIS · 2021 to 2026
$31.6M
Stem Cell and Transplantation BiologyU54DK106829 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DEREK L STIREWALT · 2015 to 2026
$9.1M
HIV-CRISPR: A novel approach to the comprehensive discovery of HIV latency factorsDP1DA051110 · NIDA · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EMERMAN, MICHAEL · 2020 to 2024
$4.4M
Lentiviral Restriction: capsid and beyondR01AI147877 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Molly OhAinle · 2019 to 2026
$4.2M
Viral Pathogenesis Training ProgramT32AI083203 · NIAID · UNIVERSITY OF WASHINGTON · PI BLOOM, JESSE D, LAGUNOFF, MICHAEL · 2009 to 2023
$2.7M
POLYCOMB REPRESSIVE COMLEXE AS KEY REGULATORS OF HIV LATENCY AND TARGETS FOR LATENCY REVERSALR61DA047023 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JAMES, LINDSEY INGERMAN · 2018 to 2020
$2.7M
Defining the impact of cannabinoids on the latent HIV reservoir through multi-omic analysisR61DA053599 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BROWNE, EDWARD P · 2021 to 2023
$2.0M
Epitranscriptomic control of erythropoiesisR01DK119270 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PADDISON, PATRICK · 2019 to 2022
$1.8M
POLYCOMB REPRESSIVE COMLEXE AS KEY REGULATORS OF HIV LATENCY AND TARGETS FOR LATENCY REVERSALR33DA047023 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JAMES, LINDSEY INGERMAN · 2022 to 2023
$1.8M
NCI NIH HHS P30 CA015704NIAID NIH HHS R01 AI143381NIAID NIH HHS R01 AI147877NIAID NIH HHS R56 AI143381NIAID NIH HHS T32 AI083203NIAID NIH HHS U54 AI170792NIAID NIH HHS U54 AI170856NIAID NIH HHS UM1 AI164567NIDA NIH HHS DP1 DA051110NIDA NIH HHS R33 DA047023NIDA NIH HHS R61 DA047023NIDA NIH HHS R61 DA053599NIDDK NIH HHS R01 DK119270NIDDK NIH HHS U54 DK106829
6 · The paper itself

Abstract

Transcriptional silencing of latent HIV-1 proviruses entails complex and overlapping mechanisms that pose a major barrier to in vivo elimination of HIV-1. We developed a new latency CRISPR screening strategy, called Latency HIV-CRISPR which uses the packaging of guideRNA-encoding lentiviral vector genomes into the supernatant of budding virions as a direct readout of factors involved in the maintenance of HIV-1 latency. We developed a custom guideRNA library targeting epigenetic regulatory genes and paired the screen with and without a latency reversal agent-AZD5582, an activator of the non-canonical NFκB pathway-to examine a combination of mechanisms controlling HIV-1 latency. A component of the Nucleosome Acetyltransferase of H4 histone acetylation (NuA4 HAT) complex, ING3, acts in concert with AZD5582 to activate proviruses in J-Lat cell lines and in a primary CD4+ T cell model of HIV-1 latency. We found that the knockout of ING3 reduces acetylation of the H4 histone tail and BRD4 occupancy on the HIV-1 LTR. However, the combination of ING3 knockout accompanied with the activation of the non-canonical NFκB pathway via AZD5582 resulted in a dramatic increase in initiation and elongation of RNA Polymerase II on the HIV-1 provirus in a manner that is nearly unique among all cellular promoters.

Indexed as

HIV-1HIV InfectionsHIV SeropositivityBromodomain Containing ProteinsCD4-Positive T-LymphocytesCell Cycle ProteinsClustered Regularly Interspaced Short Palindromic RepeatsHistonesHomeodomain ProteinsHumansNuclear ProteinsProvirusesTranscription FactorsTumor Suppressor ProteinsVirus LatencyBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsHistonesHomeodomain ProteinsING3 protein, humanNuclear ProteinsTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID36706161
PMCPMC9907829
OpenAlexW4318253732

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.