ArticleMethods in molecular biology (Clifton, N.J.)2023
Evolutionary Conservation of RNA Secondary Structure.
Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Noncoding RNAs, ncRNAs, naturally fold into structures, which allow them to perform their functions in the cell. Evolutionarily close species share structures and functions. This occurs because of shared selective pressures, resulting in conserved groups. Previous efforts in finding functional RNAs have been made in detecting conserved structures in genomes or alignments. It may occur that, within a conserved group, species-specific structures arise after species split due to positive selection. Detecting positive selection in ncRNAs is a hard problem in biology as well as bioinformatics. To detect positive selection, one should find species-specific structures within a conserved set. This chapter provides protocols to detect and analyze positive selection in ncRNA structures with the SSS-test and other free software.
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