Evidence map›Paper›PMID 36705704›Full record

ArticlePlant cell reports2023

Using the organelle glue technique to engineer the plant cell metabolome.

Kazuya Ishikawa, Makoto Kobayashi, Miyako Kusano, Keiji Numata, Yutaka Kodama

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 1 country.

Kazuya IshikawaCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Tochigi, Japan.ORCID http://orcid.org/0000-0003-0135-8891
Makoto KobayashiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan.
Miyako KusanoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan.ORCID http://orcid.org/0000-0002-0052-6155
Keiji NumataDepartment of Material Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan.ORCID http://orcid.org/0000-0003-2199-7420
Yutaka KodamaCenter for Bioscience Research and Education, Utsunomiya University, Utsunomiya, Tochigi, Japan. kodama@cc.utsunomiya-u.ac.jp.ORCID http://orcid.org/0000-0002-4720-7311
Kyoto University · JPOkayama University · JPRIKEN Center for Sustainable Resource Science · JPUniversity of Tsukuba · JPUtsunomiya University · JP

Funding

Exploratory Research for Advanced Technology JPMJER1602MEXT KAKENHI 20H05905
6 · The paper itself

Abstract

key messageBy using the organelle glue technique, we artificially manipulated organelle interactions and controlled the plant metabolome at the pathway level. Plant cell metabolic activity changes with fluctuating environmental conditions, in part via adjustments in the arrangement and interaction of organelles. This hints at the potential for designing plants with desirable metabolic activities for food and pharmaceutical industries by artificially controlling the interaction of organelles through genetic modification. We previously developed a method called the organelle glue technique, in which chloroplast-chloroplast adhesion is induced in plant cells using the multimerization properties of split fluorescent proteins. Here, we generated transgenic Arabidopsis (Arabidopsis thaliana) plants in which chloroplasts adhere to each other and performed metabolome analysis to examine the metabolic changes in these lines. In plant cells expressing a construct encoding the red fluorescent protein mCherry targeted to the chloroplast outer envelope by fusion with a signal sequence (cTP-mCherry), chloroplasts adhered to each other and formed chloroplast aggregations. Mitochondria and peroxisomes were embedded in the aggregates, suggesting that normal interactions between chloroplasts and these organelles were also affected. Metabolome analysis of the cTP-mCherry-expressing Arabidopsis shoots revealed significantly higher levels of glycine, serine, and glycerate compared to control plants. Notably, these are photorespiratory metabolites that are normally transported between chloroplasts, mitochondria, and peroxisomes. Together, our data indicate that chloroplast-chloroplast adhesion alters organellar interactions with mitochondria and peroxisomes and disrupts photorespiratory metabolite transport. These results highlight the possibility of controlling plant metabolism at the pathway level by manipulating organelle interactions.

Indexed as

ArabidopsisArabidopsis ProteinsChloroplastsMetabolomePeroxisomesPlant CellsArabidopsis ProteinsArabidopsis thalianaChloroplastFluorescent proteinMetabolomeOrganelle glue technique

Identifiers

PMID36705704
OpenAlexW4318220157

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.