Evidence map›Paper›PMID 36702576›Full record

ArticlePlant physiology2023

Shade represses photosynthetic genes by disrupting the DNA binding of GOLDEN2-LIKE1.

Namuk Kim, Jinkil Jeong, Jeongheon Kim, Jeonghwa Oh, Giltsu Choi

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
10.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. A melon (bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Genome-Wide Identification ofInternational journal of molecular sciences · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. International journal of molecular sciences · 2023
    Article
  17. PSI Photoinhibition and Changing COAntioxidants (Basel, Switzerland) · 2023
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Namuk KimDepartment of Biological Sciences, KAIST, Daejeon 34141, Korea.ORCID 0000-0001-6912-1749
Jinkil JeongDepartment of Biological Sciences, KAIST, Daejeon 34141, Korea.
Jeongheon KimDepartment of Biological Sciences, KAIST, Daejeon 34141, Korea.
Jeonghwa OhDepartment of Biological Sciences, KAIST, Daejeon 34141, Korea.ORCID 0000-0002-1887-7041
Giltsu ChoiDepartment of Biological Sciences, KAIST, Daejeon 34141, Korea.ORCID 0000-0001-9962-8321
Korea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PHYTOCHROME-INTERACTING FACTORs (PIFs) repress photosynthetic genes partly by upregulating REPRESSOR OF PHOTOSYNTHETIC GENES 1 (RPGE1) and RPGE2. However, it is unknown how RPGEs inhibit gene expression at the molecular level. Here, we show that Arabidopsis (Arabidopsis thaliana) RPGE overexpression lines display extensive similarities to the golden2-like 1 (glk1)/glk2 double mutant at the phenotypic and transcriptomic levels, prompting us to hypothesize that there is a close molecular relationship between RPGEs and chloroplast development-regulating GLK transcription factors. Indeed, we found that RPGE1 disrupts the homodimerization of GLK1 by interacting with its dimerization domain and debilitates the DNA-binding activity of GLK1. The interaction was not restricted to the Arabidopsis RPGE1-GLK1 pair, but rather extended to RPGE-GLK homolog pairs across species, providing a molecular basis for the pale green leaves of Arabidopsis transgenic lines expressing a rice (Oryza sativa) RPGE homolog. Our discovery of RPGE-GLK regulatory pairs suggests that any condition leading to an increase in RPGE levels would decrease the expression levels of GLK target genes. Consistently, we found that shade, which upregulates the RPGE mRNA by stabilizing PIFs, represses the expression of photosynthetic genes partly by inhibiting the DNA-binding activity of GLK1. Taken together, these results indicate that RPGE-GLK regulatory pairs regulate photosynthetic gene expression downstream of PIFs.

Indexed as

ArabidopsisArabidopsis ProteinsDNAGene Expression Regulation, PlantPhotosynthesisTranscription FactorsArabidopsis ProteinsDNAGLK1 protein, ArabidopsisTranscription Factors

Identifiers

PMID36702576
PMCPMC10069884
OpenAlexW4318185081

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.