Evidence map›Paper›PMID 36700487›Full record

ArticleJournal of proteome research2023

Profiling Glycosylphosphatidylinositol (GPI)-Interacting Proteins in the Cell Membrane Using a Bifunctional GPI Analogue as the Probe.

Sayan Kundu, Chuwei Lin, Mohit Jaiswal, Venkanna Babu Mullapudi, Kendall C Craig, Sixue Chen, Zhongwu Guo

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Bioconjugation Strategies for Revealing the Roles of Glycerophospholipids in Cells.Chembiochem : a European journal of chemical biology · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sayan KunduDepartment of Chemistry, University of Florida, Gainesville, Florida32611, United States.
Chuwei LinDepartment of Biology, Genetics Institute, University of Florida, Gainesville, Florida32611, United States.
Mohit JaiswalDepartment of Chemistry, University of Florida, Gainesville, Florida32611, United States.
Venkanna Babu MullapudiDepartment of Chemistry, University of Florida, Gainesville, Florida32611, United States.
Kendall C CraigDepartment of Chemistry, University of Florida, Gainesville, Florida32611, United States.
Sixue ChenDepartment of Biology, Genetics Institute, University of Florida, Gainesville, Florida32611, United States.ORCID 0000-0002-6690-7612
Zhongwu GuoDepartment of Chemistry, University of Florida, Gainesville, Florida32611, United States.ORCID 0000-0001-5302-6456
University of Florida · US

Funding

Synthetic and Biological Studies of GPI Conjugates and GPI Anchorage to Cell MembranesR35GM131686 · NIGMS · UNIVERSITY OF FLORIDA · PI Zhongwu Guo · 2019 to 2026
$2.5M
NMR console upgrade for structural biology and metabolomicsS10OD028753 · OD · UNIVERSITY OF FLORIDA · PI LONG, JOANNA R · 2020 to 2020
$600k
NIGMS NIH HHS R35 GM131686NIH HHS S10 OD028753
6 · The paper itself

Abstract

Glycosylphosphatidylinositol (GPI) anchorage of cell surface proteins to the membrane is biologically important and ubiquitous in eukaryotes. However, GPIs do not contain long enough lipids to span the entire membrane bilayer. To transduce binding signals, GPIs must interact with other membrane components, but such interactions are difficult to define. Here, a new method was developed to explore GPI-interacting membrane proteins in live cell with a bifunctional analogue of the glucosaminylphosphatidylinositol motif conserved in all GPIs as a probe. This probe contained a diazirine functionality in the lipid and an alkynyl group on the glucosamine residue to respectively facilitate the cross-linkage of GPI-binding membrane proteins with the probe upon photoactivation and then the installation of biotin to the cross-linked proteins via a click reaction for affinity-based protein isolation and analysis. Profiling the proteins pulled down from the Hela cells revealed 94 unique and 18 overrepresented proteins compared to the control, and most of them are membrane proteins and many are GPI-related. The results have proved not only the concept of using the new bifunctional GPI probe to investigate GPI-binding membrane proteins but also the important role of inositol in the biological functions of GPI anchors and GPI-anchored proteins.

Indexed as

GlycosylphosphatidylinositolsMembrane ProteinsCell MembraneHeLa CellsHumansGlycosylphosphatidylinositolsMembrane Proteinsalkynediazirineglycosylphosphatidylinositol (GPI)GPI-interacting proteinphotoactivated cross-linkingproteomics

Identifiers

PMID36700487
PMCPMC9992086
OpenAlexW4318067710

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.