Evidence map›Paper›PMID 36699852›Full record

ArticleFrontiers in plant science2022

Outlier analyses and genome-wide association study identify

Sofie M Pearson, Andrew G Griffiths, Paul Maclean, Anna C Larking, S Won Hong, Ruy Jauregui, Poppy Miller, Catherine M McKenzie, Peter J Lockhart, Jennifer A Tate and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Sofie M PearsonSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.
Andrew G GriffithsResilient Agriculture, AgResearch Grasslands, Palmerston North, New Zealand.
Paul MacleanResilient Agriculture, AgResearch Grasslands, Palmerston North, New Zealand.
Anna C LarkingResilient Agriculture, AgResearch Grasslands, Palmerston North, New Zealand.
S Won HongResilient Agriculture, AgResearch Grasslands, Palmerston North, New Zealand.
Ruy JaureguiResilient Agriculture, AgResearch Grasslands, Palmerston North, New Zealand.
Poppy MillerResilient Agriculture, AgResearch Grasslands, Palmerston North, New Zealand.
Catherine M McKenzieResilient Agriculture, AgResearch Grasslands, Palmerston North, New Zealand.
Peter J LockhartSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.
Jennifer A TateSchool of Natural Sciences, Massey University, Palmerston North, New Zealand.
John L FordGrasslands, PGG Wrightson Seeds Limited, Palmerston North, New Zealand.
Marty J FavilleResilient Agriculture, AgResearch Grasslands, Palmerston North, New Zealand.
AgResearch · NZMassey University · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Increasing water-soluble carbohydrate (WSC) content in white clover is important for improving nutritional quality and reducing environmental impacts from pastoral agriculture. Elucidation of genes responsible for foliar WSC variation would enhance genetic improvement by enabling molecular breeding approaches. The aim of the present study was to identify single nucleotide polymorphisms (SNPs) associated with variation in foliar WSC in white clover. A set of 935 white clover individuals, randomly sampled from five breeding pools selectively bred for divergent (low or high) WSC content, were assessed with 14,743 genotyping-by-sequencing SNPs, using three outlier detection methods: PCAdapt, BayeScan and KGD-F

Indexed as

genome-wide association studygenotyping-by-sequencingoutlier detectionwater-soluble carbohydratewhite clover

Identifiers

PMID36699852
PMCPMC9868827
OpenAlexW4315481261

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.