Evidence map›Paper›PMID 36697964›Full record

ArticleThe ISME journal2023

Closed genomes uncover a saltwater species of Candidatus Electronema and shed new light on the boundary between marine and freshwater cable bacteria.

Mantas Sereika, Francesca Petriglieri, Thomas Bygh Nymann Jensen, Artur Sannikov, Morten Hoppe, Per Halkjær Nielsen, Ian P G Marshall, Andreas Schramm, Mads Albertsen

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Article in The ISME journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  3. Metagenome-assembled genome sequence ofMicrobiology resource announcements · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mantas Sereika *Center for Microbial Communities, Aalborg University, Aalborg, Denmark.
Francesca Petriglieri *Center for Microbial Communities, Aalborg University, Aalborg, Denmark.
Thomas Bygh Nymann JensenCenter for Microbial Communities, Aalborg University, Aalborg, Denmark.
Artur SannikovCenter for Electromicrobiology, Aarhus University, Aarhus, Denmark.
Morten HoppeCenter for Electromicrobiology, Aarhus University, Aarhus, Denmark.
Per Halkjær NielsenCenter for Microbial Communities, Aalborg University, Aalborg, Denmark.ORCID 0000-0002-6402-1877
Ian P G MarshallCenter for Electromicrobiology, Aarhus University, Aarhus, Denmark.
Andreas SchrammCenter for Electromicrobiology, Aarhus University, Aarhus, Denmark.ORCID 0000-0002-7614-9616
Mads AlbertsenCenter for Microbial Communities, Aalborg University, Aalborg, Denmark. ma@bio.aau.dk.ORCID 0000-0002-6151-190X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cable bacteria of the Desulfobulbaceae family are centimeter-long filamentous bacteria, which are capable of conducting long-distance electron transfer. Currently, all cable bacteria are classified into two candidate genera: Candidatus Electronema, typically found in freshwater environments, and Candidatus Electrothrix, typically found in saltwater environments. This taxonomic framework is based on both 16S rRNA gene sequences and metagenome-assembled genome (MAG) phylogenies. However, most of the currently available MAGs are highly fragmented, incomplete, and thus likely miss key genes essential for deciphering the physiology of cable bacteria. Also, a closed, circular genome of cable bacteria has not been published yet. To address this, we performed Nanopore long-read and Illumina short-read shotgun sequencing of selected environmental samples and a single-strain enrichment of Ca. Electronema aureum. We recovered multiple cable bacteria MAGs, including two circular and one single-contig. Phylogenomic analysis, also confirmed by 16S rRNA gene-based phylogeny, classified one circular MAG and the single-contig MAG as novel species of cable bacteria, which we propose to name Ca. Electronema halotolerans and Ca. Electrothrix laxa, respectively. The Ca. Electronema halotolerans, despite belonging to the previously recognized freshwater genus of cable bacteria, was retrieved from brackish-water sediment. Metabolic predictions showed several adaptations to a high salinity environment, similar to the "saltwater" Ca. Electrothrix species, indicating how Ca. Electronema halotolerans may be the evolutionary link between marine and freshwater cable bacteria lineages.

Indexed as

BacteriaGeologic SedimentsElectron TransportFresh WaterPhylogenyRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID36697964
PMCPMC10030654

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.