Evidence map›Paper›PMID 36696495›Full record

ArticleScience advances2023

Characterization of proteome-size scaling by integrative omics reveals mechanisms of proliferation control in cancer.

Ian Jones, Lucas Dent, Tomoaki Higo, Theodoros Roumeliotis, Maria Arias Garcia, Hansa Shree, Jyoti Choudhary, Malin Pedersen, Chris Bakal

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Experimental evolution of cellular miniaturization reveals a putative mechanism for cell size evolution.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. AUGMENTED DOUBLY ROBUST POST-IMPUTATION INFERENCE FOR PROTEOMIC DATA.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. A GeneralizedbioRxiv : the preprint server for biology · 2024
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Ian JonesChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.ORCID 0000-0002-7491-1793
Lucas DentChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.ORCID 0000-0001-8573-4617
Tomoaki HigoChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.ORCID 0000-0002-0125-9511
Theodoros RoumeliotisChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.
Maria Arias GarciaChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.ORCID 0000-0003-0130-1107
Hansa ShreeChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.ORCID 0000-0002-3364-6735
Jyoti ChoudharyChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.ORCID 0000-0003-0881-5477
Malin PedersenChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.ORCID 0000-0003-1887-733X
Chris BakalChester Beatty Laboratories, Institute of Cancer Research, London SW3 6JB, UK.ORCID 0000-0002-0413-6744
Institute of Cancer Research · GB

Funding

Cancer Research UK 20146
6 · The paper itself

Abstract

Almost all living cells maintain size uniformity through successive divisions. Proteins that over and underscale with size can act as rheostats, which regulate cell cycle progression. Using a multiomic strategy, we leveraged the heterogeneity of melanoma cell lines to identify peptides, transcripts, and phosphorylation events that differentially scale with cell size. Subscaling proteins are enriched in regulators of the DNA damage response and cell cycle progression, whereas super-scaling proteins included regulators of the cytoskeleton, extracellular matrix, and inflammatory response. Mathematical modeling suggested that decoupling growth and proliferative signaling may facilitate cell cycle entry over senescence in large cells when mitogenic signaling is decreased. Regression analysis reveals that up-regulation of TP53 or CDKN1A/p21CIP1 is characteristic of proliferative cancer cells with senescent-like sizes/proteomes. This study provides one of the first demonstrations of size-scaling phenomena in cancer and how morphology influences the chemistry of the cell.

Indexed as

MelanomaProteomeCell CycleCell LineCell ProliferationCellular SenescenceHumansProteome

Identifiers

PMID36696495
PMCPMC9876555
OpenAlexW4318039179

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.