Evidence map›Paper›PMID 36695675›Full record

ArticleComputational diffusion MRI. CDMRI (Workshop)2022

Stepwise Stochastic Dictionary Adaptation Improves Microstructure Reconstruction with Orientation Distribution Function Fingerprinting.

Patryk Filipiak, Timothy Shepherd, Lee Basler, Anthony Zuccolotto, Dimitris G Placantonakis, Walter Schneider, Fernando E Boada, Steven H Baete

Abstract read
In one paragraph

Article in Computational diffusion MRI. CDMRI (Workshop), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Patryk FilipiakCenter for Advanced Imaging Innovation and Research (CAIR), Department of Radiology, NYU Langone Health, New York, NY, USA.ORCID 0000-0003-3429-4572
Timothy ShepherdCenter for Advanced Imaging Innovation and Research (CAIR), Department of Radiology, NYU Langone Health, New York, NY, USA.ORCID 0000-0003-0232-1636
Lee BaslerPsychology Software Tools, Inc., Pittsburgh, PA, USA.
Anthony ZuccolottoPsychology Software Tools, Inc., Pittsburgh, PA, USA.
Dimitris G PlacantonakisDepartment of Neurosurgery, Perlmutter Cancer Center, Neuroscience Institute, Kimmel Center for Stem Cell Biology, NYU Langone Health, New York, NY, USA.ORCID 0000-0003-1950-2978
Walter SchneiderUniversity of Pittsburgh, Pittsburgh, PA, USA.ORCID 0000-0002-0133-9319
Fernando E BoadaRadiological Sciences Laboratory and Molecular Imaging Program at Stanford, Department of Radiology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-3289-9917
Steven H BaeteCenter for Advanced Imaging Innovation and Research (CAIR), Department of Radiology, NYU Langone Health, New York, NY, USA.ORCID 0000-0003-3361-3789

Funding

Mapping the Human Connectome: Structure, Function, and HeritabilityU54MH091657 · NIMH · WASHINGTON UNIVERSITY · PI UGURBIL, KAMIL, VAN ESSEN, DAVID C · 2010 to 2014
$34.7M
TR&D 4: Revealing Microstructure: Biophysical modeling and validation for discovery and clinical careP41EB017183 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Hersh Chandarana · 2014 to 2026
$19.3M
Fingerprinting-Based Neuronal Fiber Identification in Brain SurgeryR01EB028774 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BAETE, STEVEN H. · 2020 to 2023
$1.9M
Q-Space Trajectories for Fast Diffusion Spectrum-based High-Definition Fiber TracR01NS082436 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BOADA, FERNANDO E · 2014 to 2017
$1.8M
Advancing and calibrating anisotropic diffusion MR imaging brain connectome with Taxon brain network diffusion phantomsR44NS103729 · NINDS · PSYCHOLOGY SOFTWARE TOOLS, INC. · PI ZUCCOLOTTO, ANTHONY P · 2019 to 2020
$1.4M
NIBIB NIH HHS P41 EB017183NIBIB NIH HHS R01 EB028774NIMH NIH HHS U54 MH091657NINDS NIH HHS R01 NS082436NINDS NIH HHS R44 NS103729
6 · The paper itself

Abstract

Fitting of the multicompartment biophysical model of white matter is an ill-posed optimization problem. One approach to make it computationally tractable is through Orientation Distribution Function (ODF) Fingerprinting. However, the accuracy of this method relies solely on ODF dictionary generation mechanisms which either sample the microstructure parameters on a multidimensional grid or draw them randomly with a uniform distribution. In this paper, we propose a stepwise stochastic adaptation mechanism to generate ODF dictionaries tailored specifically to the diffusion-weighted images in hand. The results we obtained on a diffusion phantom and in vivo human brain images show that our reconstructed diffusivities are less noisy and the separation of a free water fraction is more pronounced than for the prior (uniform) distribution of ODF dictionaries.

Indexed as

Brain microstructureDiffusion MRIODF FingerprintingStochastic optimizationWhite matter

Identifiers

PMID36695675
PMCPMC9870046

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.