Evidence map›Paper›PMID 36695018›Full record

ArticleJournal of the Royal Society, Interface2023

Context-dependent representation of within- and between-model uncertainty: aggregating probabilistic predictions in infectious disease epidemiology.

Emily Howerton, Michael C Runge, Tiffany L Bogich, Rebecca K Borchering, Hidetoshi Inamine, Justin Lessler, Luke C Mullany, William J M Probert, Claire P Smith, Shaun Truelove and 2 more

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  6. What can we learn from 100,000 freshwater forecasts? A synthesis from the NEON Ecological Forecasting Challenge.Ecological applications : a publication of the Ecological Society of America · 2025
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  15. Multiple models for outbreak decision support in the face of uncertainty.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Emily HowertonDepartment of Biology and Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA, USA.ORCID 0000-0002-0639-3728
Michael C RungeEastern Ecological Science Center at the Patuxent Research Refuge, U.S. Geological Survey, Laurel, MD, USA.ORCID 0000-0002-8081-536X
Tiffany L BogichDepartment of Biology and Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA, USA.ORCID 0000-0002-8143-5289
Rebecca K BorcheringDepartment of Biology and Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA, USA.ORCID 0000-0003-4309-2913
Hidetoshi InamineDepartment of Biology and Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA, USA.ORCID 0000-0002-6367-4630
Justin LesslerDepartment of Epidemiology and Carolina Population Center, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0002-9741-8109
Luke C MullanyApplied Physics Laboratory, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0003-4668-9803
William J M ProbertBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, UK.ORCID 0000-0002-3437-759X
Claire P SmithDepartment of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0003-1069-9460
Shaun TrueloveDepartment of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0003-0538-0607
Cécile ViboudFogarty International Center, National Institutes of Health, Bethesda, MD, USA.ORCID 0000-0003-3243-4711
Katriona SheaDepartment of Biology and Center for Infectious Disease Dynamics, The Pennsylvania State University, University Park, PA, USA.ORCID 0000-0002-7607-8248

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Probabilistic predictions support public health planning and decision making, especially in infectious disease emergencies. Aggregating outputs from multiple models yields more robust predictions of outcomes and associated uncertainty. While the selection of an aggregation method can be guided by retrospective performance evaluations, this is not always possible. For example, if predictions are conditional on assumptions about how the future will unfold (e.g. possible interventions), these assumptions may never materialize, precluding any direct comparison between predictions and observations. Here, we summarize literature on aggregating probabilistic predictions, illustrate various methods for infectious disease predictions via simulation, and present a strategy for choosing an aggregation method when empirical validation cannot be used. We focus on the linear opinion pool (LOP) and Vincent average, common methods that make different assumptions about between-prediction uncertainty. We contend that assumptions of the aggregation method should align with a hypothesis about how uncertainty is expressed within and between predictions from different sources. The LOP assumes that between-prediction uncertainty is meaningful and should be retained, while the Vincent average assumes that between-prediction uncertainty is akin to sampling error and should not be preserved. We provide an R package for implementation. Given the rising importance of multi-model infectious disease hubs, our work provides useful guidance on aggregation and a deeper understanding of the benefits and risks of different approaches.

Indexed as

Communicable DiseasesComputer SimulationHumansPublic HealthRetrospective StudiesUncertaintycombinationensemblelinear opinion poolmulti-model scenario projectionsuncertaintyVincent average

Identifiers

PMID36695018
PMCPMC9874266

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.