Evidence map›Paper›PMID 36692427›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2023

Zinc Finger MYND-Type Containing 8 (ZMYND8) Is Epigenetically Regulated in Mutant Isocitrate Dehydrogenase 1 (IDH1) Glioma to Promote Radioresistance.

Stephen V Carney, Kaushik Banerjee, Anzar Mujeeb, Brandon Zhu, Santiago Haase, Maria L Varela, Padma Kadiyala, Claire E Tronrud, Ziwen Zhu, Devarshi Mukherji and 16 more

Open access · greenAbstract readEditorialComment
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Radiosensitization of IDH-Mutated Gliomas through ZMYND8 - a Pathway to Improved Outcomes.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Article
  10. Bacteria associated with glioma: a next wave in cancer treatment.Frontiers in cellular and infection microbiology · 2023
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 1 country.

Stephen V CarneyCancer Biology Training Program, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0001-7786-5158
Kaushik BanerjeeDepartment of Neurosurgery, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0002-9903-4192
Anzar MujeebDepartment of Neurosurgery, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0001-6114-7776
Brandon ZhuGraduate Program in Biomedical Engineering, University of Michigan College of Engineering, Ann Arbor, Michigan.ORCID 0000-0001-9046-5984
Santiago HaaseDepartment of Neurosurgery, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0001-5964-0748
Maria L VarelaDepartment of Neurosurgery, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0003-4878-3211
Padma KadiyalaGraduate Program in Immunology, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0002-3273-9905
Claire E TronrudDepartment of Neurosurgery, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0003-4022-7384
Ziwen ZhuDepartment of Neurosurgery, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0002-6681-9153
Devarshi MukherjiNeuroscience, University of Michigan College of Literature, Science, and the Arts (LSA), Ann Arbor, Michigan.ORCID 0000-0002-5384-1853
Preethi GorlaNeuroscience, University of Michigan College of Literature, Science, and the Arts (LSA), Ann Arbor, Michigan.ORCID 0000-0003-3626-3366
Yilun SunDepartment of Radiation Oncology, University Hospitals/Case Western Reserve University, Cleveland, Ohio.ORCID 0000-0002-1341-382X
Rebecca TagettDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0001-8604-7683
Felipe J NúñezDepartment of Neurosurgery, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0002-4962-3642
Maowu LuoDepartment of Pathology, UT Southwestern Medical Center, Dallas, Texas.ORCID 0000-0001-9219-9229
Weibo LuoDepartment of Pathology, UT Southwestern Medical Center, Dallas, Texas.ORCID 0000-0002-1992-0320
Mats LjungmanDepartment of Radiation Oncology, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0003-1553-6695
Yayuan LiuDepartment of Pharmaceutical Sciences, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0001-8287-4737
Ziyun XiaDepartment of Pharmaceutical Sciences, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0002-6409-1517
Anna SchwendemanDepartment of Radiation Oncology, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0002-8023-8080
Tingting QinDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0003-3810-7578
Maureen A SartorDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan.ORCID 0000-0001-6155-5702
Joseph F CostelloDepartment of Neurological Surgery, University of California, San Francisco, California.ORCID 0000-0003-3189-584X
Daniel P CahillDepartment of Neurosurgery, Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, Massachusetts.ORCID 0000-0003-2552-6546
Pedro R LowensteinCancer Biology Training Program, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0002-8427-4409
Maria G CastroCancer Biology Training Program, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0003-2237-2756
University of Michigan · USSouthwestern Medical Center · USMassachusetts General Hospital · USNeurological Surgery · USUniversity Hospitals of Cleveland · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 1988 to 2026
$178.2M
Strategic Vision & Impact on Environmental HealthP30ES017885 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Dana Dolinoy · 2011 to 2026
$21.3M
Training Program in Tumor MicroenvironmentT32CA009676 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Maria G Castro, Analisa Virginia DiFeo · 1992 to 2026
$7.3M
Oligodendrocyte-focused rAAV gene therapy strategies for Canavan disease and LeukodystrophiesR01NS076991 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Guangping Gao · 2012 to 2026
$5.7M
Immune-suppressive Myeloid Cells in the Glioma Microenvironment: Signaling Mechanisms and Novel Therapeutic StrategiesR37NS094804 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CASTRO, MARIA G · 2015 to 2021
$2.9M
3-D spatial approach to discover genomic effectors of immunosuppression during malignant transformationR01CA244838 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COSTELLO, JOSEPH F · 2020 to 2024
$2.7M
Systemic Delivery of Targeted Bi-Compartmental Nanoparticles for Glioblastoma Therapeutics (Supplement)R01NS124167 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Maria G Castro, JOERG LAHANN · 2022 to 2026
$2.6M
Novel nano-vaccine technology for inducing immunity against gliomasR01NS122536 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CASTRO, MARIA G, MOON, JAMES J. · 2021 to 2025
$2.6M
Uncover the role of H3.3-G343R mutation in shaping the DNA damage response, anti-tumor immunity and mechanisms of resistance in glioma.R01NS122165 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Maria G Castro · 2022 to 2026
$2.5M
The Role of Collagen and its Signaling Mechanisms in Glioma Progression and Invasion.R01NS122234 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Pedro R. Lowenstein · 2022 to 2026
$2.4M
Identifying intercellular circuits driving cell phenotypes within a nicheR01CA243916 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JERUSS, JACQUELINE SARA, SHEA, LONNIE D · 2019 to 2023
$2.3M
Neuroimmunology of Malignant Brain Tumors: Innate MechanismsR01NS096756 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LOWENSTEIN, PEDRO R. · 2016 to 2020
$2.1M
NCI NIH HHS P30 CA046592NCI NIH HHS R01 CA243916NCI NIH HHS R01 CA244838NCI NIH HHS T32 CA009676NIEHS NIH HHS P30 ES017885NINDS NIH HHS R01 NS076991NINDS NIH HHS R01 NS082311NINDS NIH HHS R01 NS096756NINDS NIH HHS R01 NS105556NINDS NIH HHS R01 NS122165NINDS NIH HHS R01 NS122234NINDS NIH HHS R01 NS122536NINDS NIH HHS R01 NS124167NINDS NIH HHS R21 NS091555NINDS NIH HHS R21 NS123879NINDS NIH HHS R37 NS094804
6 · The paper itself

Abstract

purposeMutant isocitrate dehydrogenase 1 (mIDH1) alters the epigenetic regulation of chromatin, leading to a hypermethylation phenotype in adult glioma. This work focuses on identifying gene targets epigenetically dysregulated by mIDH1 to confer therapeutic resistance to ionizing radiation (IR). EXPERIMENTAL

designWe evaluated changes in the transcriptome and epigenome in a radioresistant mIDH1 patient-derived glioma cell culture (GCC) following treatment with an mIDH1-specific inhibitor, AGI-5198. We identified Zinc Finger MYND-Type Containing 8 (ZMYND8) as a potential target of mIDH1 reprogramming. We suppressed ZMYND8 expression by shRNA knockdown and genetic knockout (KO) in mIDH1 glioma cells and then assessed cellular viability to IR. We assessed the sensitivity of mIDH1 GCCS to pharmacologic inhibition of ZMYND8-interacting partners: HDAC, BRD4, and PARP.

resultsInhibition of mIDH1 leads to an upregulation of gene networks involved in replication stress. We found that the expression of ZMYND8, a regulator of DNA damage response, was decreased in three patient-derived mIDH1 GCCs after treatment with AGI-5198. Knockdown of ZMYND8 expression sensitized mIDH1 GCCs to radiotherapy marked by decreased cellular viability. Following IR, mIDH1 glioma cells with ZMYND8 KO exhibit significant phosphorylation of ATM and sustained γH2AX activation. ZMYND8 KO mIDH1 GCCs were further responsive to IR when treated with either BRD4 or HDAC inhibitors. PARP inhibition further enhanced the efficacy of radiotherapy in ZMYND8 KO mIDH1 glioma cells.

conclusionsThese findings indicate the impact of ZMYND8 in the maintenance of genomic integrity and repair of IR-induced DNA damage in mIDH1 glioma. See related commentary by Sachdev et al., p. 1648.

Indexed as

GliomaIsocitrate DehydrogenaseBenzeneacetamidesBromodomain Containing ProteinsCell Cycle ProteinsEpigenesis, GeneticHumansImidazolesMYND DomainsNuclear ProteinsPoly(ADP-ribose) Polymerase InhibitorsTranscription FactorsAGI-5198BenzeneacetamidesBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsIDH1 protein, humanImidazolesIsocitrate DehydrogenaseNuclear ProteinsPoly(ADP-ribose) Polymerase InhibitorsTranscription Factors

Identifiers

PMID36692427
PMCPMC10159884
OpenAlexW4317866650

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.