Evidence map›Paper›PMID 36691056›Full record

ArticleJournal of nanobiotechnology2023

Dinuclear complex-induced DNA melting.

Niklas Biere, Dennis Kreft, Volker Walhorn, Sabrina Schwarzbich, Thorsten Glaser, Dario Anselmetti

Abstract read
In one paragraph

Article in Journal of nanobiotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Niklas BiereExperimental Biophysics & Applied Nanoscience, Faculty of Physics, Bielefeld University, 33615, Bielefeld, Germany. nbiere@physik.uni-bielefeld.de.
Dennis KreftExperimental Biophysics & Applied Nanoscience, Faculty of Physics, Bielefeld University, 33615, Bielefeld, Germany.
Volker WalhornExperimental Biophysics & Applied Nanoscience, Faculty of Physics, Bielefeld University, 33615, Bielefeld, Germany.
Sabrina SchwarzbichLehrstuhl für Anorganische Chemie I, Faculty of Chemistry, Bielefeld University, 33615, Bielefeld, Germany.
Thorsten GlaserLehrstuhl für Anorganische Chemie I, Faculty of Chemistry, Bielefeld University, 33615, Bielefeld, Germany.
Dario AnselmettiExperimental Biophysics & Applied Nanoscience, Faculty of Physics, Bielefeld University, 33615, Bielefeld, Germany.

Funding

Deutsche Forschungsgemeinschaft DA 370/8-1
6 · The paper itself

Abstract

Dinuclear copper complexes have been designed for molecular recognition in order to selectively bind to two neighboring phosphate moieties in the backbone of double strand DNA. Associated biophysical, biochemical and cytotoxic effects on DNA were investigated in previous works, where atomic force microscopy (AFM) in ambient conditions turned out to be a particular valuable asset, since the complexes influence the macromechanical properties and configurations of the strands. To investigate and scrutinize these effects in more depth from a structural point of view, cutting-edge preparation methods and scanning force microscopy under ultra-high vacuum (UHV) conditions were employed to yield submolecular resolution images. DNA strand mechanics and interactions could be resolved on the single base pair level, including the amplified formation of melting bubbles. Even the interaction of singular complex molecules could be observed. To better assess the results, the appearance of treated DNA is also compared to the behavior of untreated DNA in UHV on different substrates. Finally, we present data from a statistical simulation reasoning about the nanomechanics of strand dissociation. This sort of quantitative experimental insights paralleled by statistical simulations impressively shade light on the rationale for strand dissociations of this novel DNA interaction process, that is an important nanomechanistic key and novel approach for the development of new chemotherapeutic agents.

Indexed as

DNABase PairingMicroscopy, Atomic ForceNucleic Acid DenaturationDNAAFMBiomoleculesDNAElectrospray ionizationMolecular recognition

Identifiers

PMID36691056
PMCPMC9869567

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.