Evidence map›Paper›PMID 36690861›Full record

ArticleNature microbiology2023

The Mycobacterium tuberculosis protein O-phosphorylation landscape.

Andrew Frando, Vishant Boradia, Marina Gritsenko, Claude Beltejar, Le Day, David R Sherman, Shuyi Ma, Jon M Jacobs, Christoph Grundner

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 40 citations in OpenAlex.

  1. Protein kinase F regulates the virulence ofInfection and immunity · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Journal of bacteriology · 2026
    Review
  6. Article
  7. Tamoxifen inhibits histidine kinases ofMicrobiology spectrum · 2026
    Article
  8. Article
  9. Review
  10. Protein kinase F regulates the virulence ofbioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Andrew FrandoCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, USA.
Vishant BoradiaCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, USA.
Marina GritsenkoPacific Northwest National Laboratory, Richland, WA, USA.ORCID 0000-0001-9992-9829
Claude BeltejarCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, USA.
Le DayPacific Northwest National Laboratory, Richland, WA, USA.
David R ShermanDepartment of Microbiology, University of Washington, Seattle, WA, USA.ORCID 0000-0003-2185-944X
Shuyi MaCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, USA.
Jon M JacobsPacific Northwest National Laboratory, Richland, WA, USA.
Christoph GrundnerCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, WA, USA. Christoph.grundner@seattlechildrens.org.ORCID 0000-0003-0596-6798
Infectious Disease Research Institute · USPacific Northwest National Laboratory · USCenter for Infectious Disease Research · USUniversity of Washington · US

Funding

Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
Dual Targeting of Mtb Resistance MechanismsR01AI158159 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI GRUNDNER, CHRISTOPH · 2020 to 2024
$4.0M
INTERDISCIPLINARY PROGRAM IN BACTERIAL PATHOGENESIST32AI055396 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 2003 to 2019
$2.8M
The role of Ser/Thr/Tyr phosphosignaling in the M. tuberculosis latency switchR01AI117023 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI GRUNDNER, CHRISTOPH · 2016 to 2020
$2.4M
Serine hydrolase regulators of Mycobacterium tuberculosis non-replicating statesR21AI137571 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI GRUNDNER, CHRISTOPH · 2018 to 2019
$520k
Functional phosphosignaling in Mtb infectionR21AI153766 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI GRUNDNER, CHRISTOPH · 2020 to 2021
$491k
Multigene knockdown in Mycobacterium tuberculosis by repurposing the endogenous type III CRISPR systemR03AI131223 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI GRUNDNER, CHRISTOPH · 2017 to 2018
$196k
NIAID NIH HHS R01 AI117023NIAID NIH HHS R01 AI158159NIAID NIH HHS R03 AI131223NIAID NIH HHS R21 AI137571NIAID NIH HHS R21 AI153766NIAID NIH HHS T32 AI055396NIGMS NIH HHS P41 GM103493
6 · The paper itself

Abstract

Bacterial phosphosignalling has been synonymous with two-component systems and their histidine kinases, but many bacteria, including Mycobacterium tuberculosis (Mtb), also code for Ser/Thr protein kinases (STPKs). STPKs are the main phosphosignalling enzymes in eukaryotes but the full extent of phosphorylation on protein Ser/Thr and Tyr (O-phosphorylation) in bacteria is untested. Here we explored the global signalling capacity of the STPKs in Mtb using a panel of STPK loss-of-function and overexpression strains combined with mass spectrometry-based phosphoproteomics. A deep phosphoproteome with >14,000 unique phosphosites shows that O-phosphorylation in Mtb is a vastly underexplored protein modification that affects >80% of the proteome and extensively interfaces with the transcriptional machinery. Mtb O-phosphorylation gives rise to an expansive, distributed and cooperative network of a complexity that has not previously been seen in bacteria and that is on par with eukaryotic phosphosignalling networks. A resource of >3,700 high-confidence direct substrate-STPK interactions and their transcriptional effects provides signalling context for >80% of Mtb proteins and allows the prediction and assembly of signalling pathways for mycobacterial physiology.

Indexed as

Mycobacterium tuberculosisProtein Serine-Threonine KinasesBacterial ProteinsPhosphorylationProtein KinasesProteomeSignal TransductionBacterial ProteinsProtein KinasesProtein Serine-Threonine KinasesProteome

Identifiers

PMID36690861
PMCPMC11376436
OpenAlexW4317802155

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.