Evidence map›Paper›PMID 36690169›Full record

ArticleMolecular and cellular endocrinology2023

Genomic glucocorticoid action in embryonic mouse neural stem cells.

Kimberly J Berry, Uma Chandran, Fangping Mu, Dinesh K Deochand, T Lei, Miriam Pagin, Silvia K Nicolis, A Paula Monaghan-Nichols, Inez Rogatsky, Donald B DeFranco

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular endocrinology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Kimberly J BerryDepartment of Neuroscience, University of Pittsburgh, Pittsburgh, PA, USA. Electronic address: kjb@pitt.edu.
Uma ChandranDepartment of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA; Center for Research Computing, University of Pittsburgh, Pittsburgh, PA, USA.
Fangping MuDepartment of Human Genetics, University of Pittsburgh, Pittsburgh, PA, USA; Center for Research Computing, University of Pittsburgh, Pittsburgh, PA, USA.
Dinesh K DeochandHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, USA.
T LeiDepartment of Biomedical Sciences, University of Missouri Kansas City School of Medicine, Kansas City, MO, USA.
Miriam PaginDepartment of Biotechnology and Biosciences, University Milano-Bicocca, 20126, Milano, Italy.
Silvia K NicolisDepartment of Biotechnology and Biosciences, University Milano-Bicocca, 20126, Milano, Italy.
A Paula Monaghan-NicholsDepartment of Biomedical Sciences, University of Missouri Kansas City School of Medicine, Kansas City, MO, USA.
Inez RogatskyHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, USA; Graduate Program in Immunology and Microbial Pathogenesis, Weill Cornell Graduate School of Medical Sciences, New York, USA.
Donald B DeFrancoDepartment of Neuroscience, University of Pittsburgh, Pittsburgh, PA, USA; Department of Pharmacology and Chemical Biology, University of Pittsburgh, Pittsburgh, PA, USA.
University of Pittsburgh · USHospital for Special Surgery · USUniversity of Milano-Bicocca · ITUniversity of Missouri–Kansas City · US

Funding

Glucocorticoid-regulated transcription networks in macrophage biologyR01DK099087 · NIDDK · HOSPITAL FOR SPECIAL SURGERY · PI INEZ ROGATSKY · 2014 to 2026
$6.0M
Post-Initiation control of transcription in inflammatory macrophagesR01AI148129 · NIAID · HOSPITAL FOR SPECIAL SURGERY · PI ROGATSKY, INEZ · 2020 to 2024
$3.0M
A Safer Glucocorticoid to Treat Neonatal Lung Injury with Limited Adverse Neurologic EffectsR01HD104215 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DEFRANCO, DONALD B, MONAGHAN-NICHOLS, A PAULA · 2021 to 2025
$2.9M
Selective Glucocorticoid Action in the Developing BrainR01HD087288 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DEFRANCO, DONALD B, MONAGHAN-NICHOLS, A PAULA · 2017 to 2021
$2.3M
The role of transcriptional cofactor GRIP1 in microglia-driven neuroinflammationR21NS110520 · NINDS · HOSPITAL FOR SPECIAL SURGERY · PI ROGATSKY, INEZ · 2019 to 2019
$484k
NIAID NIH HHS R01 AI148129NICHD NIH HHS R01 HD087288NICHD NIH HHS R01 HD104215NIDDK NIH HHS R01 DK099087NINDS NIH HHS R21 NS110520
6 · The paper itself

Abstract

Prenatal exposure to synthetic glucocorticoids (sGCs) reprograms brain development and predisposes the developing fetus towards potential adverse neurodevelopmental outcomes. Using a mouse model of sGC administration, previous studies show that these changes are accompanied by sexually dimorphic alterations in the transcriptome of neural stem and progenitor cells (NSPCs) derived from the embryonic telencephalon. Because cell type-specific gene expression profiles tightly regulate cell fate decisions and are controlled by a flexible landscape of chromatin domains upon which transcription factors and enhancer elements act, we multiplexed data from four genome-wide assays: RNA-seq, ATAC-seq (assay for transposase accessible chromatin followed by genome wide sequencing), dual cross-linking ChIP-seq (chromatin immunoprecipitation followed by genome wide sequencing), and microarray gene expression to identify novel relationships between gene regulation, chromatin structure, and genomic glucocorticoid receptor (GR) action in NSPCs. These data reveal that GR binds preferentially to predetermined regions of accessible chromatin to influence gene programming and cell fate decisions. In addition, we identify SOX2 as a transcription factor that impacts the genomic response of select GR target genes to sGCs (i.e., dexamethasone) in NSPCs.

Indexed as

GlucocorticoidsNeural Stem CellsAnimalsChromatinFemaleGene Expression RegulationGenomicsMiceMouse Embryonic Stem CellsPregnancyReceptors, GlucocorticoidTranscription FactorsChromatinGlucocorticoidsReceptors, GlucocorticoidTranscription FactorsChromatinGlucocorticoidNeural stem progenitorNeurodevelopmentSOX2

Identifiers

PMID36690169
PMCPMC10057471
OpenAlexW4317530454

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.