Evidence map›Paper›PMID 36686893›Full record

ArticleRevista panamericana de salud publica = Pan American journal of public health2023

Genomic surveillance and sequencing of SARS-CoV-2 across South America.

Maria Fernanda Ribeiro Dias, Bruce Veiga Andriolo, Diego Henrique Silvestre, Paula Lopes Cascabulho, Manuela Leal da Silva

Abstract read
In one paragraph

Article in Revista panamericana de salud publica = Pan American journal of public health, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Maria Fernanda Ribeiro DiasSecretaria de Educação do Espírito Santo (SEDU) Vila VelhaEspírito Santo Brazil Secretaria de Educação do Espírito Santo (SEDU), Vila Velha, Espírito Santo, Brazil.
Bruce Veiga AndrioloPrograma de Pós-graduação em Biotecnologia Instituto Nacional de Metrologia, Qualidade e Tecnologia (INMETRO) Duque de Caxias, Rio de Janeiro Brazil Programa de Pós-graduação em Biotecnologia, Instituto Nacional de Metrologia, Qualidade e Tecnologia (INMETRO), Duque de Caxias, Rio de Janeiro, Brazil.
Diego Henrique SilvestreInstituto de Nutrição Josué de Castro Universidade Federal do Rio de Janeiro (UFRJ) Rio de Janeiro Brazil Instituto de Nutrição Josué de Castro, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil.
Paula Lopes CascabulhoUniversidade Católica de Petrópolis Petrópolis, Rio de Janeiro Brazil Universidade Católica de Petrópolis, Petrópolis, Rio de Janeiro, Brazil.
Manuela Leal da SilvaInstituto de Biodiversidade e Sustentabilidade (NUPEM) Universidade Federal do Rio de Janeiro (UFRJ) Macaé, Rio de Janeiro Brazil Instituto de Biodiversidade e Sustentabilidade (NUPEM), Universidade Federal do Rio de Janeiro (UFRJ), Macaé, Rio de Janeiro, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

After 2 years of the COVID-19 pandemic, the protocols used to control infection lack attention and analysis. We present data about deposits of complete genomic sequences of SARS-CoV-2 in the Global Initiative on Sharing All Influenza Data (GISAID) database made between January 2021 and May 31, 2022. We build the distribution profile of SARS-CoV-2 variants across South America, highlighting the contribution and influence of each variant over time. Monitoring the genomic sequences in GISAID illustrates negligence in the follow up of infected patients in South America and also the discrepancies between the number of complete genomes deposited throughout the pandemic by developed and developing countries. While Europe and North America account for more than 9 million of the genomes deposited in GISAID, Africa and South America deposited less than 400 000 genome sequences. Genomic surveillance is important for detecting early warning signs of new circulating viruses, assisting in the discovery of new variants and controlling pandemics.

Indexed as

COVID-19genomehealth surveillanceSARS-CoV-2South America

Identifiers

PMID36686893
PMCPMC9847409

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.