Evidence map›Paper›PMID 36685920›Full record

ArticleFrontiers in genetics2022

Genome-wide exploration of a pyroptosis-related gene module along with immune cell infiltration patterns in bronchopulmonary dysplasia.

Leiming Chen, Chaofan Shi, Guoping Zhou, Xiaofeng Yang, Zhenqin Xiong, Xiaoxue Ma, Lan Zhu, Xuejiao Ma, Yan Mao, Yifang Hu and 7 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Leiming ChenDepartment of Laboratory Medicine, Obstetrics and Gynecology Hospital of Fudan University, Shanghai, China.
Chaofan ShiDepartment of Radiology, Yongping County People's Hospital, Dali, China.
Guoping ZhouDepartment of Neonatology, Yongping County People's Hospital, Dali, China.
Xiaofeng YangDepartment of Pediatrics, Dali Bai Autonomous Prefecture People's Hospital, Dali, China.
Zhenqin XiongDepartment of Neonatology, Yongping County People's Hospital, Dali, China.
Xiaoxue MaDepartment of Neonatology, Yongping County People's Hospital, Dali, China.
Lan ZhuDepartment of Neonatology, Yongping County People's Hospital, Dali, China.
Xuejiao MaDepartment of Neonatology, Yongping County People's Hospital, Dali, China.
Yan MaoDepartment of Pediatrics, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Yifang HuDepartment of Geriatric Endocrinology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Jimei WangDepartment of Neonatology, Obstetrics and Gynecology Hospital of Fudan University, Shanghai, China.
Xinfang TangDepartment of Nephrology, The Affiliated Lianyungang Oriental Hospital of Xuzhou Medical University, The Affiliated Lianyungang Oriental Hospital of Kangda College of Nanjing Medical University, The Affiliated Lianyungang Oriental Hospital of Bengbu Medical College, Lianyungang, China.
Yunlei BaoDepartment of Neonatology, Obstetrics and Gynecology Hospital of Fudan University, Shanghai, China.
Yunxia MaDepartment of Neonatology, Yongping County People's Hospital, Dali, China.
Fei LuoDepartment of Neonatology, Obstetrics and Gynecology Hospital of Fudan University, Shanghai, China.
Chuyan WuDepartment of Rehabilitation Medicine, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
Feng JiangDepartment of Neonatology, Obstetrics and Gynecology Hospital of Fudan University, Shanghai, China.
Jingning County People's Hospital · CNObstetrics and Gynecology Hospital of Fudan University · CNNanjing Medical University · CNLianyungang Oriental Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pyroptosis plays a crucial role in bronchopulmonary dysplasia (BPD) and is associated with various lung injury illnesses. However, the function of pyroptosis-related genes (PRGs) in BPD remains poorly understood. The gene expression omnibus (GEO) database was searched for information on genes associated with BPD. Twenty-five BPD-related DE-PRGs were identified, all of which were closely associated with pyroptosis regulation and immunological response. LASSO and SVM-RFE algorithms identified CHMP7, NLRC4, NLRP2, NLRP6, and NLRP9 among the 25 differentially expressed PRGs as marker genes with acceptable diagnostic capabilities. Using these five genes, we also generated a nomogram with excellent predictive power. Annotation enrichment analyses revealed that these five genes may be implicated in BPD and numerous BPD-related pathways. In addition, the ceRNA network showed an intricate regulatory link based on the marker genes. In addition, CIBERSORT-based studies revealed that alterations in the immunological microenvironment of BPD patients may be associated with the marker genes. We constructed a diagnostic nomogram and gave insight into the mechanism of BPD. Its diagnostic value for BPD must be evaluated in further research before it can be used in clinical practice.

Indexed as

bioinformaticsbronchopulmonary dysplasiadiagnosticimmune microenvironmentpyroptosis

Identifiers

PMID36685920
PMCPMC9845403
OpenAlexW4313585246

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.