Evidence map›Paper›PMID 36685870›Full record

ArticleFrontiers in genetics2022

Metabolite profiling and transcriptome analyses provide insight into the regulatory network of graft incompatibility in litchi.

Yanjie Hou, Xianquan Qin, Hongye Qiu, Dongbo Li, Ning Xu, Shuwei Zhang, Chen Fang, Hongli Li

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yanjie HouHorticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China.
Xianquan QinHorticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China.
Hongye QiuHorticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China.
Dongbo LiHorticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China.
Ning XuHorticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China.
Shuwei ZhangHorticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China.
Chen FangHorticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China.
Hongli LiHorticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China.
Guangxi Academy of Agricultural Science · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Litchi is an important commercial fruit crop widely grown in the world. Graft incompatibility between rootstocks and scions is a major constraint for large-scale cultivation of litchi orchards, popularization of new and excellent litchi varieties, and associated industrial development. Further, the genetic mechanism of graft incompatibility is still unclear in litchi. To reduce the incompatibility problems, this study investigated metabolic and transcriptomic differences between graft compatible and incompatible rootstock-scion combinations of litchi. The result of metabolomics analysis showed that incompatible rootstock-scion interaction modified the profiles of several metabolic substances. However, various compounds of flavonoids, phenolic acids, and lignin predominantly exhibited significantly altered abundance in graft incompatible combinations. Transcriptome analysis identified that graft incompatibility induces dynamic gene differences. The majority of these differentially expressed genes were enriched in biosynthetic pathways of phenylpropanoids. The differential expressions of genes in these pathways could be linked to the differential abundance levels of flavonoids, phenolic acids, and lignin compounds. Integrated metabolomic and transcriptomic analyses revealed a strong relationship between differential genes and differential metabolites identified in this study. In addition, identified hub genes and metabolites were closely associated with graft incompatibility of litchi. This study characterized the abundance of metabolites and genes in graft incompatible combinations and further discussed the genetic mechanism of graft incompatibility in litchi. Our results provide a platform to dissect the molecular mechanisms of graft incompatibility in the litchi fruit.

Indexed as

gene expressiongraft incompatibilitylitchimetabolomeproductivity

Identifiers

PMID36685870
PMCPMC9849251
OpenAlexW4313500741

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.