Evidence map›Paper›PMID 36685537›Full record

ArticleFrontiers in immunology2022

Spatial genomics reveals a high number and specific location of B cells in the pancreatic ductal adenocarcinoma microenvironment of long-term survivors.

Hosein M Aziz, Lawlaw Saida, Willem de Koning, Andrew P Stubbs, Yunlei Li, Kostandinos Sideras, Elena Palacios, Jaime Feliu, Marta Mendiola, Casper H J van Eijck and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Hosein M AzizDepartment of Surgery, Erasmus University Medical Center, Rotterdam, Netherlands.
Lawlaw SaidaDepartment of Pathology & Clinical Bioinformatics, The Tumor Immuno-Pathology Laboratory, Erasmus University Medical Center, Rotterdam, Netherlands.
Willem de KoningDepartment of Pathology & Clinical Bioinformatics, The Tumor Immuno-Pathology Laboratory, Erasmus University Medical Center, Rotterdam, Netherlands.
Andrew P StubbsDepartment of Pathology & Clinical Bioinformatics, Erasmus University Medical Center, Rotterdam, Netherlands.
Yunlei LiDepartment of Pathology & Clinical Bioinformatics, The Tumor Immuno-Pathology Laboratory, Erasmus University Medical Center, Rotterdam, Netherlands.
Kostandinos SiderasDivisions of Medical Oncology and Hematology, Mayo Clinic, Rochester, MN, United States.
Elena PalaciosDepartment of Pathology, La Paz University Hospital, IdiPAZ, Madrid, Spain.
Jaime FeliuDepartment of Medical Oncology, La Paz University Hospital, IdiPAZ, Madrid, Spain.
Marta MendiolaCentro de Investigación Biomédica en red de Cáncer, CIBERONC, Instituto de Salud Carlos III, Madrid, Spain.
Casper H J van EijckDepartment of Surgery, Erasmus University Medical Center, Rotterdam, Netherlands.
Dana A M MustafaDepartment of Pathology & Clinical Bioinformatics, The Tumor Immuno-Pathology Laboratory, Erasmus University Medical Center, Rotterdam, Netherlands.
Erasmus MC · NLCentro de Investigación Biomédica en Red de Cáncer · ESHospital Universitario La Paz · ESMayo Clinic in Arizona · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and aim: Only 10% of pancreatic ductal adenocarcinoma (PDAC) patients survive longer than five years. Factors underlining long-term survivorship in PDAC are not well understood. Therefore, we aimed to identify the key players in the tumor immune microenvironment (TIME) associated with long-term survivorship in PDAC patients. Methods: The immune-related gene expression profiles of resected PDAC tumors of patients who survived and remained recurrence-free of disease for ≥36 months (long-term survivors, n=10) were compared to patients who had survived ≤6 months (short-term survivors, n=10) due to tumor recurrence. Validation was performed by the spatial protein expression profile of immune cells using the GeoMx™ Digital Spatial Profiler. An independent cohort of samples consisting of 12 long-term survivors and 10 short-term survivors, was used for additional validation. The independent validation was performed by combining qualitative immunohistochemistry and quantitative protein expression profiling. Results: B cells were found to be significantly increased in the TIME of long-term survivors by gene expression profiling ( Conclusion: This is the first comprehensive study that connects the immune landscape of gene expression profiles and protein spatial infiltration with the survivorship of PDAC patients. We found a higher number and a specific location of B cells in TIME of long-term survivors which emphasizes the importance of B cells and B cell-based therapy for future personalized immunotherapy in PDAC patients.

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsGenomicsHumansNeoplasm Recurrence, LocalSurvivorsTumor MicroenvironmentB cellsgene expressionlong-term survivalpancreatic ductal adenocarcinomaspatial genomicstumor immune microenvironment

Identifiers

PMID36685537
PMCPMC9846531
OpenAlexW4313586249

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.