Evidence map›Paper›PMID 36681685›Full record

ArticleScientific reports2023

Evaluation of emphysema on thoracic low-dose CTs through attention-based multiple instance deep learning.

Jordan Fuhrman, Rowena Yip, Yeqing Zhu, Artit C Jirapatnakul, Feng Li, Claudia I Henschke, David F Yankelevitz, Maryellen L Giger

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jordan FuhrmanCommittee on Medical Physics, Department of Radiology, The University of Chicago, 5841 S Maryland Avenue, MC2026, Chicago, 60637, USA. jdfuhrman@uchicago.edu.
Rowena YipDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, 10029, USA.
Yeqing ZhuDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, 10029, USA.
Artit C JirapatnakulDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, 10029, USA.
Feng LiCommittee on Medical Physics, Department of Radiology, The University of Chicago, 5841 S Maryland Avenue, MC2026, Chicago, 60637, USA.
Claudia I HenschkeDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, 10029, USA.
David F YankelevitzDepartment of Radiology, Icahn School of Medicine at Mount Sinai, New York, 10029, USA.
Maryellen L GigerCommittee on Medical Physics, Department of Radiology, The University of Chicago, 5841 S Maryland Avenue, MC2026, Chicago, 60637, USA.

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
RADX TECH - CERES NANOSCIENCE INC NANOTRAP PARTICLE MANUFACTURING75N92020C00021 · NHLBI · CERES NANOSCIENCES, LLLP · PI DUNLAP, ROSS · 2021 to 2021
$4.0M
Protected Radiomics Analysis Commons for Deep Learning in Biomedical DiscoveryS10OD025081 · OD · UNIVERSITY OF CHICAGO · PI GIGER, MARYELLEN L. · 2018 to 2018
$339k
High-Performance Computer Cluster for Image AnalysisS10RR021039 · NCRR · UNIVERSITY OF CHICAGO · PI NISHIKAWA, ROBERT M · 2007 to 2007
$230k
NCATS NIH HHS UL1 TR000430NCI NIH HHS P30 CA014599NCRR NIH HHS S10 RR021039NHLBI NIH HHS 75N92020C00008NHLBI NIH HHS 75N92020C00021NIH HHS S10 OD025081
6 · The paper itself

Abstract

In addition to lung cancer, other thoracic abnormalities, such as emphysema, can be visualized within low-dose CT scans that were initially obtained in cancer screening programs, and thus, opportunistic evaluation of these diseases may be highly valuable. However, manual assessment for each scan is tedious and often subjective, thus we have developed an automatic, rapid computer-aided diagnosis system for emphysema using attention-based multiple instance deep learning and 865 LDCTs. In the task of determining if a CT scan presented with emphysema or not, our novel Transfer AMIL approach yielded an area under the ROC curve of 0.94 ± 0.04, which was a statistically significant improvement compared to other methods evaluated in our study following the Delong Test with correction for multiple comparisons. Further, from our novel attention weight curves, we found that the upper lung demonstrated a stronger influence in all scan classes, indicating that the model prioritized upper lobe information. Overall, our novel Transfer AMIL method yielded high performance and provided interpretable information by identifying slices that were most influential to the classification decision, thus demonstrating strong potential for clinical implementation.

Indexed as

Deep LearningEmphysemaPulmonary EmphysemaHumansLungTomography, X-Ray Computed

Identifiers

PMID36681685
PMCPMC9867724

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.