Evidence map›Paper›PMID 36681668›Full record

ArticleSignal transduction and targeted therapy2023

Immunological and metabolic characteristics of the Omicron variants infection.

Jiejie Geng, Xu Yang, Kun Wang, Ke Wang, Ruo Chen, Zhi-Nan Chen, Chuan Qin, Guizhen Wu, Youchun Wang, Ke Xu and 19 more

Open access · goldAbstract read
In one paragraph

Article in Signal transduction and targeted therapy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

  1. Trial
  2. CD147/Basigin: From Integrative Molecular Hub to Translational Therapeutic Target.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 7 institutions in 1 country.

Jiejie Geng *Department of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Xu Yang *Department of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Kun Wang *Department of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Ke Wang *Department of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.ORCID 0000-0001-8913-7115
Ruo Chen *Department of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Zhi-Nan ChenDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Chuan QinKey Laboratory of Human Disease Comparative Medicine, Chinese Ministry of Health, Key Laboratory for Animal Models of Emerging and Remerging Infectious Diseases, Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100871, China.ORCID 0000-0002-6261-1232
Guizhen WuMHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Preven- tion, Chinese Center for Disease Control and Prevention, Beijing, 100871, China.
Youchun WangDivision of HIV/AIDS and Sex-transmitted Virus Vaccines, Institute for Biological Product Control, National Institutes for Food and Drug Control (NIFDC) and WHO Collaborating Center for Standardization and Evaluation of Biologicals, Beijing, 102629, China.ORCID 0000-0001-9769-5141
Ke XuMHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Preven- tion, Chinese Center for Disease Control and Prevention, Beijing, 100871, China.
Peng DuBeijing Institute of Biotechnology, Beijing, 100871, China.
Jiangning LiuKey Laboratory of Human Disease Comparative Medicine, Chinese Ministry of Health, Key Laboratory for Animal Models of Emerging and Remerging Infectious Diseases, Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100871, China.
Shirui ChenDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Tao ZhangDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Xiuxuan SunDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Ting GuoDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Ying ShiDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Zheng ZhangDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Ding WeiDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Peng LinDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China.
Qingyi WangSchool of Basic Medicine, Fourth Military Medical University, Xi'an, 710032, China.
Jing YuanThe Third People's Hospital of Shenzhen, Shenzhen, 518112, China.ORCID 0000-0002-8937-9568
Jiuxin QuThe Third People's Hospital of Shenzhen, Shenzhen, 518112, China.
Jin ZouThe Third People's Hospital of Shenzhen, Shenzhen, 518112, China.
Yingxia LiuThe Third People's Hospital of Shenzhen, Shenzhen, 518112, China. yingxialiu@hotmail.com.
Hongzhou LuThe Third People's Hospital of Shenzhen, Shenzhen, 518112, China. luhongzhou@fudan.edu.cn.
Ping ZhuDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China. zhuping@fmmu.edu.cn.
Huijie BianDepartment of Cell Biology of National Translational Science Center for Molecular Medicine and Department of Clinical Immunology of Xijing Hospital, Fourth Military Medical University, Xi'an, 710032, China. hjbian@fmmu.edu.cn.ORCID 0000-0003-4690-4622
Liang ChenSchool of Medicine, Shanghai University, Shanghai, 200444, China. lchen1@shu.edu.cn.
Xijing Hospital · CNShenzhen Third People’s Hospital · CNChinese Academy of Medical Sciences & Peking Union Medical College · CNNational Institute for Viral Disease Control and Prevention · CNAir Force Medical University · CNNational Institutes for Food and Drug Control · CNShanghai University · CN

Funding

National Natural Science Foundation of China (National Science Foundation of China) 92169211
6 · The paper itself

Abstract

The Omicron variants of SARS-CoV-2, primarily authenticated in November 2021 in South Africa, has initiated the 5th wave of global pandemics. Here, we systemically examined immunological and metabolic characteristics of Omicron variants infection. We found Omicron resisted to neutralizing antibody targeting receptor binding domain (RBD) of wildtype SARS-CoV-2. Omicron could hardly be neutralized by sera of Corona Virus Disease 2019 (COVID-19) convalescents infected with the Delta variant. Through mass spectrometry on MHC-bound peptidomes, we found that the spike protein of the Omicron variants could generate additional CD8 + T cell epitopes, compared with Delta. These epitopes could induce robust CD8 + T cell responses. Moreover, we found booster vaccination increased the cross-memory CD8 + T cell responses against Omicron. Metabolic regulome analysis of Omicron-specific T cell showed a metabolic profile that promoted the response of memory T cells. Consistently, a greater fraction of memory CD8 + T cells existed in Omicron stimulated peripheral blood mononuclear cells (PBMCs). In addition, CD147 was also a receptor for the Omicron variants, and CD147 antibody inhibited infection of Omicron. CD147-mediated Omicron infection in a human CD147 transgenic mouse model induced exudative alveolar pneumonia. Taken together, our data suggested that vaccination booster and receptor blocking antibody are two effective strategies against Omicron.

Indexed as

COVID-19AnimalsAntibodies, NeutralizingEpitopesHumansLeukocytes, MononuclearMiceMice, TransgenicSARS-CoV-2Antibodies, NeutralizingEpitopes

Identifiers

PMID36681668
PMCPMC9860238
OpenAlexW4317636924

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.