Evidence map›Paper›PMID 36680707›Full record

ArticleMedical & biological engineering & computing2023

A new generative approach for optical coherence tomography data scarcity: unpaired mutual conversion between scanning presets.

Mateo Gende, Joaquim de Moura, Jorge Novo, Manuel G Penedo, Marcos Ortega

Abstract read
In one paragraph

Article in Medical & biological engineering & computing, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mateo GendeGrupo, VARPA, Instituto de Investigación Biomédica de A Coruña (INIBIC), Universidade da Coruña, Xubias de Arriba, 84, A Coruña, 15006, A Coruña, Spain.
Joaquim de MouraGrupo, VARPA, Instituto de Investigación Biomédica de A Coruña (INIBIC), Universidade da Coruña, Xubias de Arriba, 84, A Coruña, 15006, A Coruña, Spain. joaquim.demoura@udc.es.ORCID http://orcid.org/0000-0002-2050-3786
Jorge NovoGrupo, VARPA, Instituto de Investigación Biomédica de A Coruña (INIBIC), Universidade da Coruña, Xubias de Arriba, 84, A Coruña, 15006, A Coruña, Spain.
Manuel G PenedoGrupo, VARPA, Instituto de Investigación Biomédica de A Coruña (INIBIC), Universidade da Coruña, Xubias de Arriba, 84, A Coruña, 15006, A Coruña, Spain.
Marcos OrtegaGrupo, VARPA, Instituto de Investigación Biomédica de A Coruña (INIBIC), Universidade da Coruña, Xubias de Arriba, 84, A Coruña, 15006, A Coruña, Spain.

Funding

Axencia Galega de Innovación IN845D 2020/38Instituto de Salud Carlos III DTS18/00136Ministerio de Ciencia e Innovación PID2019-108435RB-I00Ministerio de Ciencia e Innovación RTI2018-095894-B-I00Xunta de Galicia ED431C 2020/24Xunta de Galicia ED431G 2019/01Xunta de Galicia ED481A 2021/161Xunta de Galicia ED481B 2021/059
6 · The paper itself

Abstract

In optical coherence tomography (OCT), there is a trade-off between the scanning time and image quality, leading to a scarcity of high quality data. OCT platforms provide different scanning presets, producing visually distinct images, limiting their compatibility. In this work, a fully automatic methodology for the unpaired visual conversion of the two most prevalent scanning presets is proposed. Using contrastive unpaired translation generative adversarial architectures, low quality images acquired with the faster Macular Cube preset can be converted to the visual style of high visibility Seven Lines scans and vice-versa. This modifies the visual appearance of the OCT images generated by each preset while preserving natural tissue structure. The quality of original and synthetic generated images was compared using BRISQUE. The synthetic generated images achieved very similar scores to original images of their target preset. The generative models were validated in automatic and expert separability tests. These models demonstrated they were able to replicate the genuine look of the original images. This methodology has the potential to create multi-preset datasets with which to train robust computer-aided diagnosis systems by exposing them to the visual features of different presets they may encounter in real clinical scenarios without having to obtain additional data. Graphical Abstract Unpaired mutual conversion between scanning presets. Two generative adversarial models are trained for the conversion of OCT images into images of another scanning preset, replicating the visual features that characterise said preset.

Indexed as

Diagnosis, Computer-AssistedTomography, Optical CoherenceImage Processing, Computer-AssistedGenerative adversarial networkOptical coherence tomographyStyle transferSynthetic images

Identifiers

PMID36680707
PMCPMC10083164

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.