Evidence map›Paper›PMID 36680044›Full record

ArticleViruses2022

Dynamic Evolution of Avian RNA Virus Sensors: Repeated Loss of RIG-I and RIPLET.

Veronika Krchlíková, Tomáš Hron, Martin Těšický, Tao Li, Lenka Ungrová, Jiří Hejnar, Michal Vinkler, Daniel Elleder

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  9. Article
  10. Concurrent loss of ciliary genesRoyal Society open science · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Veronika KrchlíkováInstitute of Molecular Genetics of the Czech Academy of Sciences, 14220 Prague, Czech Republic.ORCID 0000-0001-9192-5866
Tomáš HronInstitute of Molecular Genetics of the Czech Academy of Sciences, 14220 Prague, Czech Republic.ORCID 0000-0002-0589-2568
Martin TěšickýDepartment of Zoology, Faculty of Science, Charles University, 12843 Prague, Czech Republic.
Tao LiDepartment of Zoology, Faculty of Science, Charles University, 12843 Prague, Czech Republic.ORCID 0000-0002-3133-6194
Lenka UngrováInstitute of Molecular Genetics of the Czech Academy of Sciences, 14220 Prague, Czech Republic.
Jiří HejnarInstitute of Molecular Genetics of the Czech Academy of Sciences, 14220 Prague, Czech Republic.
Michal VinklerDepartment of Zoology, Faculty of Science, Charles University, 12843 Prague, Czech Republic.ORCID 0000-0003-3572-9494
Daniel EllederInstitute of Molecular Genetics of the Czech Academy of Sciences, 14220 Prague, Czech Republic.ORCID 0000-0001-9041-5274
Czech Academy of Sciences, Institute of Molecular Genetics · CZCharles University · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinoic acid-inducible gene I (RIG-I) and melanoma differentiation-associated protein 5 (MDA5) are key RNA virus sensors belonging to the RIG-I-like receptor (RLR) family. The activation of the RLR inflammasome leads to the establishment of antiviral state, mainly through interferon-mediated signaling. The evolutionary dynamics of RLRs has been studied mainly in mammals, where rare cases of RLR gene losses were described. By in silico screening of avian genomes, we previously described two independent disruptions of MDA5 in two bird orders. Here, we extend this analysis to approximately 150 avian genomes and report 16 independent evolutionary events of RIG-I inactivation. Interestingly, in almost all cases, these inactivations are coupled with genetic disruptions of RIPLET/RNF135, an ubiquitin ligase RIG-I regulator. Complete absence of any detectable RIG-I sequences is unique to several galliform species, including the domestic chicken (

Indexed as

RNARNA VirusesAnimalsAntiviral AgentsBirdsDEAD Box Protein 58Immunity, InnateRNA HelicasesAntiviral AgentsDEAD Box Protein 58RNARNA Helicasesavian genomegene lossinnate immunityviral sensors

Identifiers

PMID36680044
PMCPMC9861763
OpenAlexW4312038043

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.