Evidence map›Paper›PMID 36678617›Full record

ArticlePharmaceuticals (Basel, Switzerland)2023

Integrative Ligand-Based Pharmacophore Modeling, Virtual Screening, and Molecular Docking Simulation Approaches Identified Potential Lead Compounds against Pancreatic Cancer by Targeting FAK1.

Mohammad Habibur Rahman Molla, Mohammed Othman Aljahdali, Md Afsar Ahmed Sumon, Amer H Asseri, Hisham N Altayb, Md Shafiqul Islam, Ahad Amer Alsaiari, F A Dain Md Opo, Nushrat Jahan, Foysal Ahammad and 1 more

Open access · goldAbstract read
In one paragraph

Article in Pharmaceuticals (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 44 citations in OpenAlex.

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  8. Exploring the Antibacterial Potential ofPharmaceuticals (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Mohammad Habibur Rahman MollaDepartment of Biological Sciences, Faculty of Science, King Abdul-Aziz University, Jeddah 21598, Saudi Arabia.ORCID 0000-0003-1617-5342
Mohammed Othman AljahdaliDepartment of Biological Sciences, Faculty of Science, King Abdul-Aziz University, Jeddah 21598, Saudi Arabia.ORCID 0000-0002-1086-0210
Md Afsar Ahmed SumonMarine Biology Department, Faculty of Marine Sciences, King Abdul-Aziz University, Jeddah 21598, Saudi Arabia.ORCID 0000-0002-6355-8314
Amer H AsseriDepartment of Biochemistry, Faculty of Sciences, King Abdul-Aziz University, Jeddah 21589, Saudi Arabia.
Hisham N AltaybDepartment of Biochemistry, Faculty of Sciences, King Abdul-Aziz University, Jeddah 21589, Saudi Arabia.ORCID 0000-0002-2635-9383
Md Shafiqul IslamInstitute of Marine Sciences, University of Chittagong, Chittagong 4431, Bangladesh.
Ahad Amer AlsaiariClinical Laboratories Science Department, College of Applied Medical Science, Taif University, Taif 21944, Saudi Arabia.ORCID 0000-0003-4117-5811
F A Dain Md OpoDepartment of Biological Sciences, Faculty of Science, King Abdul-Aziz University, Jeddah 21598, Saudi Arabia.
Nushrat JahanDepartment of Animal Husbandry, Patuakhali Science and Technology University, Dumki-Patuakhali Highway 8602, Bangladesh.
Foysal AhammadDivision of Biological and Biomedical Sciences (BBS), College of Health and Life Sciences (CHLS), Hamad Bin Khalifa University (HBKU), Doha 122104, Qatar.ORCID 0000-0001-7313-4729
Farhan MohammadDivision of Biological and Biomedical Sciences (BBS), College of Health and Life Sciences (CHLS), Hamad Bin Khalifa University (HBKU), Doha 122104, Qatar.ORCID 0000-0002-2465-1508
King Abdulaziz University · SAHamad bin Khalifa University · QAPatuakhali Science and Technology University · BDTaif University · SAUniversity of Chittagong · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pancreatic cancer is a very deadly disease with a 5-year survival rate, making it one of the leading causes of cancer-related deaths globally. Focal adhesion kinase 1 (FAK1) is a ubiquitously expressed protein in pancreatic cancer. FAK, a tyrosine kinase that is overexpressed in cancer cells, is crucial for the development of tumors into malignant phenotypes. FAK functions in response to extracellular signals by triggering transmembrane receptor signaling, which enhances focal adhesion turnover, cell adhesion, cell migration, and gene expression. The ligand-based drug design approach was used to identify potential compounds against the target protein, which included molecular docking: ADME (absorption, distribution, metabolism, and excretion), toxicity, molecular dynamics (MD) simulation, and molecular mechanics generalized born surface area (MM-GBSA). Following the retrieval of twenty hits, four compounds were selected for further evaluation based on a molecular docking approach. Three newly discovered compounds, including PubChem CID24601203, CID1893370, and CID16355541, with binding scores of -10.4, -10.1, and -9.7 kcal/mol, respectively, may serve as lead compounds for the treatment of pancreatic cancer associated with FAK1. The ADME (absorption, distribution, metabolism, and excretion) and toxicity analyses demonstrated that the compounds were effective and nontoxic. However, further wet laboratory investigations are required to evaluate the activity of the drugs against the cancer.

Indexed as

ADMETFAK1 proteinligand-based pharmacophore drug designMD simulationMM-GBSAmolecular dockingpancreatic cancerpurchasable compounds

Identifiers

PMID36678617
PMCPMC9912262
OpenAlexW4315853525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.