Evidence map›Paper›PMID 36677030›Full record

ArticleMetabolites2023

Similarity Downselection: Finding the

Felicity F Nielson, Bill Kay, Stephen J Young, Sean M Colby, Ryan S Renslow, Thomas O Metz

Erratum issuedAbstract read
In one paragraph

Article in Metabolites, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Felicity F NielsonPacific Northwest National Laboratory, Biological Sciences Division, Richland, WA 99354, USA.ORCID 0000-0003-0979-4153
Bill KayPacific Northwest National Laboratory, Advanced Computing, Mathematics, and Data Division, Richland, WA 99354, USA.
Stephen J YoungPacific Northwest National Laboratory, Advanced Computing, Mathematics, and Data Division, Richland, WA 99354, USA.
Sean M ColbyPacific Northwest National Laboratory, Biological Sciences Division, Richland, WA 99354, USA.
Ryan S RenslowPacific Northwest National Laboratory, Biological Sciences Division, Richland, WA 99354, USA.
Thomas O MetzPacific Northwest National Laboratory, Biological Sciences Division, Richland, WA 99354, USA.ORCID 0000-0001-6049-3968

Funding

Pacific Northwest Advanced Compound Identification CoreU2CES030170 · NIEHS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI METZ, THOMAS O · 2018 to 2021
$4.6M
NIEHS NIH HHS U2C ES030170NIEHS NIH HHS U2CES030170
6 · The paper itself

Abstract

Computational methods for creating in silico libraries of molecular descriptors (e.g., collision cross sections) are becoming increasingly prevalent due to the limited number of authentic reference materials available for traditional library building. These so-called "reference-free metabolomics" methods require sampling sets of molecular conformers in order to produce high accuracy property predictions. Due to the computational cost of the subsequent calculations for each conformer, there is a need to sample the most relevant subset and avoid repeating calculations on conformers that are nearly identical. The goal of this study is to introduce a heuristic method of finding the most dissimilar conformers from a larger population in order to help speed up reference-free calculation methods and maintain a high property prediction accuracy. Finding the set of the

Indexed as

conformerdownselectiongraphmetabolomicsmoleculeMonte CarloPythonsamplingsimilarity)structure

Identifiers

PMID36677030
PMCPMC9864474

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.