Evidence map›Paper›PMID 36675053›Full record

ArticleInternational journal of molecular sciences2023

A Joint Transcriptomic and Metabolomic Analysis Reveals the Regulation of Shading on Lignin Biosynthesis in Asparagus.

Junying Ma, Xiaoyan Li, Maolin He, Yanwen Li, Wei Lu, Mengyao Li, Bo Sun, Yangxia Zheng

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
  5. Article
  6. CaHorticulture research · 2025
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  7. Integrated transcriptome and metabolome analyses reveal regulation mechanism of biomass and non‑structural carbohydrate allocation inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Article
  8. Article
  9. Frontiers in plant science · 2025
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  10. Melatonin-inducedFrontiers in plant science · 2025
    Article
  11. Article
  12. Review
  13. Profiles of phenolics and their synthetic pathways inFood chemistry. Molecular sciences · 2024
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Junying MaCollege of Horticulture, Sichuan Agricultural University, Chengdu 611130, China.
Xiaoyan LiCollege of Horticulture, Sichuan Agricultural University, Chengdu 611130, China.
Maolin HeCollege of Horticulture, Sichuan Agricultural University, Chengdu 611130, China.
Yanwen LiCollege of Horticulture, Sichuan Agricultural University, Chengdu 611130, China.
Wei LuCollege of Horticulture, Sichuan Agricultural University, Chengdu 611130, China.
Mengyao LiCollege of Horticulture, Sichuan Agricultural University, Chengdu 611130, China.ORCID 0000-0002-3199-9465
Bo SunCollege of Horticulture, Sichuan Agricultural University, Chengdu 611130, China.ORCID 0000-0003-3306-656X
Yangxia ZhengCollege of Horticulture, Sichuan Agricultural University, Chengdu 611130, China.
Sichuan Agricultural University · CN

Funding

Shanxi Provincial Department of science and technology 2022ZY1-CGZY-07the Science and Technology Plan Project of Sichuan Province 2019ZHFP0268
6 · The paper itself

Abstract

Asparagus belongs to the Liliaceae family and has important economic and pharmacological value. Lignin plays a crucial role in cell wall structural integrity, stem strength, water transport, mechanical support and plant resistance to pathogens. In this study, various biological methods were used to study the mechanism of shading on the asparagus lignin accumulation pathway. The physiological results showed that shading significantly reduced stem diameter and cell wall lignin content. Microstructure observation showed that shading reduced the number of vascular bundles and xylem area, resulting in decreased lignin content, and thus reducing the lignification of asparagus. Cinnamic acid, caffeic acid, ferulic acid and sinapyl alcohol are crucial intermediate metabolites in the process of lignin synthesis. Metabolomic profiling showed that shading significantly reduced the contents of cinnamic acid, caffeic acid, ferulic acid and sinapyl alcohol. Transcriptome profiling identified 37 differentially expressed genes related to lignin, including

Indexed as

Adaptation, PhysiologicalAsparagus PlantLigninSunlightCaffeic AcidsCinnamatesCoumaric AcidsGene Expression ProfilingGene Expression Regulation, PlantPhenylpropionatesTranscriptomecaffeic acidCaffeic AcidsCinnamatescinnamic acidCoumaric Acidsferulic acidLigninPhenylpropionatessinapyl alcoholasparaguscombined analysislignin biosynthesismetabolomicshading treatmenttranscriptomic

Identifiers

PMID36675053
PMCPMC9866179
OpenAlexW4316041454

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.