Evidence map›Paper›PMID 36674928›Full record

ArticleInternational journal of molecular sciences2023

Crystal Structure of the SH3 Domain of ASAP1 in Complex with the Proline Rich Motif (PRM) of MICAL1 Reveals a Unique SH3/PRM Interaction Mode.

Xuanyan Jia, Leishu Lin, Shun Xu, Lingxuan Li, Zhiyi Wei, Cong Yu, Fengfeng Niu

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

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0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xuanyan JiaSchool of Life Science and Technology, Harbin Institute of Technology, Harbin 150001, China.ORCID 0000-0002-3152-702X
Leishu LinBrain Research Center and Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0000-0002-1214-4760
Shun XuBrain Research Center and Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0000-0003-2717-9269
Lingxuan LiBrain Research Center and Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0000-0003-2715-6446
Zhiyi WeiBrain Research Center and Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0000-0002-4446-6502
Cong YuBrain Research Center and Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China.
Fengfeng NiuBrain Research Center and Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China.ORCID 0000-0001-7029-4989

Funding

National Natural Science Foundation of China 32170697Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Fundamental Research Institutions 2021SHIBS0002Shenzhen Science and Technology Program JCYJ20200109141241950
6 · The paper itself

Abstract

SH3 domains are common protein binding modules. The target sequence of SH3 domains is usually a proline-rich motif (PRM) containing a minimal "PxxP" sequence. The mechanism of how different SH3 domains specifically choose their targets from vast PxxP-containing sequences is still not very clear, as many reported SH3/PRM interactions are weak and promiscuous. Here, we identified the binding of the SH3 domain of ASAP1 to the PRM of MICAL1 with a sub-μM binding affinity, and determined the crystal structure of ASAP1-SH3 and MICAL1-PRM complex. Our structural and biochemical analyses revealed that the target-binding pocket of ASAP1-SH3 contains two negatively charged patches to recognize the "xPx + Px+" sequence in MICAL1-PRM and consequently strengthen the interaction, differing from the typical SH3/PRM interaction. This unique PRM-binding pocket is also found in the SH3 domains of GTPase Regulator associated with focal adhesion kinase (GRAF) and Src kinase associated phosphoprotein 1 (SKAP1), which we named SH3

Indexed as

Prolinesrc Homology DomainsAmino Acid SequenceBinding SitesProtein BindingProlineASAP1crystal structurehigh affinityMICAL1proline-rich motifprotein–protein interactionSH3

Identifiers

PMID36674928
PMCPMC9865144

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.