Evidence map›Paper›PMID 36674867›Full record

ArticleInternational journal of molecular sciences2023

Evaluation of Two Simultaneous Metabolomic and Proteomic Extraction Protocols Assessed by Ultra-High-Performance Liquid Chromatography Tandem Mass Spectrometry.

Ruba A Zenati, Alexander D Giddey, Hamza M Al-Hroub, Yousra A Hagyousif, Waseem El-Huneidi, Yasser Bustanji, Eman Abu-Gharbieh, Mohammad A Y Alqudah, Mohd Shara, Ahmad Y Abuhelwa and 2 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 20 citations in OpenAlex.

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  18. Multi-Omics Profiling ofMicroorganisms · 2023
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Ruba A ZenatiDepartment of Medicinal Chemistry, College of Pharmacy, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0002-0371-7440
Alexander D GiddeyResearch Institute of Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates.
Hamza M Al-HroubResearch Institute of Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0001-5621-9851
Yousra A HagyousifDepartment of Medicinal Chemistry, College of Pharmacy, University of Sharjah, Sharjah 27272, United Arab Emirates.
Waseem El-HuneidiResearch Institute of Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0002-1580-2589
Yasser BustanjiDepartment of Basic and Clinical Pharmacology, College of Medicine, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0003-1315-0609
Eman Abu-GharbiehResearch Institute of Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0002-5972-0681
Mohammad A Y AlqudahDepartment of Pharmacy Practice and Pharmacotherapeutics, College of Pharmacy, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0001-7210-7964
Mohd SharaDepartment of Pharmacy Practice and Pharmacotherapeutics, College of Pharmacy, University of Sharjah, Sharjah 27272, United Arab Emirates.
Ahmad Y AbuhelwaResearch Institute of Medical and Health Sciences, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0002-4182-065X
Nelson C SoaresDepartment of Medicinal Chemistry, College of Pharmacy, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0003-2331-8532
Mohammad H SemreenDepartment of Medicinal Chemistry, College of Pharmacy, University of Sharjah, Sharjah 27272, United Arab Emirates.ORCID 0000-0002-0169-7538
University of Sharjah · AEJordan University of Science and Technology · JOUniversity of Jordan · JO

Funding

University of Sharjah 2001110138University of Sharjah 2201110155
6 · The paper itself

Abstract

Untargeted multi-omics analysis of plasma is an emerging tool for the identification of novel biomarkers for evaluating disease prognosis, and for developing a better understanding of molecular mechanisms underlying human disease. The successful application of metabolomic and proteomic approaches relies on reproducibly quantifying a wide range of metabolites and proteins. Herein, we report the results of untargeted metabolomic and proteomic analyses from blood plasma samples following analyte extraction by two frequently-used solvent systems: chloroform/methanol and methanol-only. Whole blood samples were collected from participants (n = 6) at University Hospital Sharjah (UHS) hospital, then plasma was separated and extracted by two methods: (i) methanol precipitation and (ii) 4:3 methanol:chloroform extraction. The coverage and reproducibility of the two methods were assessed by ultra-high-performance liquid chromatography-electrospray ionization quadrupole time-of-flight mass spectrometry (UHPLC-ESI-QTOF-MS). The study revealed that metabolite extraction by methanol-only showed greater reproducibility for both metabolomic and proteomic quantifications than did methanol/chloroform, while yielding similar peptide coverage. However, coverage of extracted metabolites was higher with the methanol/chloroform precipitation.

Indexed as

MethanolTandem Mass SpectrometryChloroformChromatography, High Pressure LiquidHumansProteomicsReproducibility of ResultsChloroformMethanolmetabolomicsmulti-omicsplasmaproteomicsreproducibility

Identifiers

PMID36674867
PMCPMC9865896
OpenAlexW4315650926

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.