Evidence map›Paper›PMID 36674728›Full record

ArticleInternational journal of molecular sciences2023

Single-Molecule Study of DNAzyme Reveals Its Intrinsic Conformational Dynamics.

Yiming Zhang, Zongzhou Ji, Xin Wang, Yi Cao, Hai Pan

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Cleaving DNA with DNA: Cooperative Tuning of Structure and Reactivity Driven by Copper Ions.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yiming ZhangWenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China.
Zongzhou JiWenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China.
Xin WangWenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China.
Yi CaoWenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China.ORCID 0000-0003-1493-7868
Hai PanWenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China.ORCID 0000-0001-6660-9052
University of Chinese Academy of Sciences · CNWenzhou-Kean University · CN

Funding

Wenzhou Institute, University of Chinese Academy of Sciences WIUCASQS2021007Wenzhou Institute, University of Chinese Academy of Sciences WIUCASQS2022003
6 · The paper itself

Abstract

DNAzyme is a class of DNA molecules that can perform catalytic functions with high selectivity towards specific metal ions. Due to its potential applications for biosensors and medical therapeutics, DNAzyme has been extensively studied to characterize the relationships between its biochemical properties and functions. Similar to protein enzymes and ribozymes, DNAzymes have been found to undergo conformational changes in a metal-ion-dependent manner for catalysis. Despite the important role the conformation plays in the catalysis process, such structural and dynamic information might not be revealed by conventional approaches. Here, by using the single-molecule fluorescence resonance energy transfer (smFRET) technique, we were able to investigate the detailed conformational dynamics of a uranyl-specific DNAzyme 39E. We observed conformation switches of 39E to a folded state with the addition of Mg

Indexed as

DNA, CatalyticFluorescence Resonance Energy TransferIonsMetalsNucleic Acid ConformationDNA, CatalyticIonsMetalsconformational dynamicsDNAzymemetal ionssingle–molecule fluorescence resonance energy transfer

Identifiers

PMID36674728
PMCPMC9864658
OpenAlexW4313891120

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.