Evidence map›Paper›PMID 36672938›Full record

ArticleGenes2023

Identification and Functional Prediction of Long Non-Coding RNA in Longissimus Dorsi Muscle of Queshan Black and Large White Pigs.

Yaqing Dou, Kunlong Qi, Yingke Liu, Chenlei Li, Chenglei Song, Yilin Wei, Zhe Zhang, Xinjian Li, Kejun Wang, Xiuling Li and 3 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Yaqing DouCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.
Kunlong QiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.ORCID 0000-0001-9595-6336
Yingke LiuCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.
Chenlei LiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.
Chenglei SongCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.
Yilin WeiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.
Zhe ZhangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.
Xinjian LiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.
Kejun WangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.ORCID 0000-0003-4337-980X
Xiuling LiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.ORCID 0000-0003-1175-2622
Ruimin QiaoCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.ORCID 0000-0002-2648-6227
Feng YangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.ORCID 0000-0003-1915-6008
Xuelei HanCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou 450002, China.
Henan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long non-coding RNA (lncRNA) participates in the regulation of various biological processes, but its function and characteristics in intramuscular fat (IMF) deposition in different breeds of pigs have not been fully understood. IMF content is one of the important factors affecting pork quality. In the present study, the differentially expressed lncRNAs (DE lncRNAs) and their target genes were screened by comparing Queshan Black (QS) and Large White (LW) pigs based on RNA-seq. The results displayed 55 DE lncRNAs between QS and LW, 29 upregulated and 26 downregulated, with 172 co-located target genes, and 6203 co-expressed target genes. The results of GO and KEGG analysis showed that the target genes of DE lncRNAs were involved in multiple pathways related to lipogenesis and lipid metabolism, such as the lipid biosynthetic process, protein phosphorylation, activation of MAPK activity, and the Jak-STAT signaling pathway. By constructing regulatory networks, lincRNA-ZFP42-

Indexed as

RNA, Long NoncodingAnimalsLipid MetabolismMuscle, SkeletalRNA, MessengerRNA-SeqSwineRNA, Long NoncodingRNA, Messengerintramuscular fatlarge white pigsLncRNAspork qualityqueshan black pigs

Identifiers

PMID36672938
PMCPMC9858627
OpenAlexW4315786844

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.