Evidence map›Paper›PMID 36671652›Full record

ArticleBioengineering (Basel, Switzerland)2023

Collinearity and Dimensionality Reduction in Radiomics: Effect of Preprocessing Parameters in Hypertrophic Cardiomyopathy Magnetic Resonance T1 and T2 Mapping.

Chiara Marzi, Daniela Marfisi, Andrea Barucci, Jacopo Del Meglio, Alessio Lilli, Claudio Vignali, Mario Mascalchi, Giancarlo Casolo, Stefano Diciotti, Antonio Claudio Traino and 2 more

Abstract read
In one paragraph

Article in Bioengineering (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Chiara MarziInstitute of Applied Physics "Nello Carrara" (IFAC), Council of National Research (CNR), Sesto Fiorentino, 50019 Florence, Italy.ORCID 0000-0002-1791-3573
Daniela MarfisiUnit of Medical Physics, Pisa University Hospital "Azienda Ospedaliero-Universitaria Pisana", Via Roma 67, 56126 Pisa, Italy.ORCID 0000-0002-5613-7474
Andrea BarucciInstitute of Applied Physics "Nello Carrara" (IFAC), Council of National Research (CNR), Sesto Fiorentino, 50019 Florence, Italy.ORCID 0000-0002-3759-7512
Jacopo Del MeglioUnit of Cardiology, Azienda USL Toscana Nord Ovest, Versilia Hospital, 55041 Lido di Camaiore, Italy.ORCID 0000-0003-2937-1000
Alessio LilliUnit of Cardiology, Azienda USL Toscana Nord Ovest, Versilia Hospital, 55041 Lido di Camaiore, Italy.ORCID 0000-0002-9263-286X
Claudio VignaliUnit of Radiology, Azienda USL Toscana Nord Ovest, Versilia Hospital, 55041 Lido di Camaiore, Italy.
Mario MascalchiDepartment of Experimental and Clinical Biomedical Sciences "Mario Serio", University of Florence, 50121 Florence, Italy.ORCID 0000-0002-5537-2982
Giancarlo CasoloUnit of Cardiology, Azienda USL Toscana Nord Ovest, Versilia Hospital, 55041 Lido di Camaiore, Italy.ORCID 0000-0003-3094-9391
Stefano DiciottiDepartment of Electrical, Electronic, and Information Engineering "Guglielmo Marconi", University of Bologna, 47522 Cesena, Italy.ORCID 0000-0001-8778-7819
Antonio Claudio TrainoUnit of Medical Physics, Pisa University Hospital "Azienda Ospedaliero-Universitaria Pisana", Via Roma 67, 56126 Pisa, Italy.ORCID 0000-0003-3521-6293
Carlo TessaUnit of Radiology, Azienda USL Toscana Nord Ovest, Apuane Hospital, 54100 Massa, Italy.ORCID 0000-0001-7624-5168
Marco GiannelliUnit of Medical Physics, Pisa University Hospital "Azienda Ospedaliero-Universitaria Pisana", Via Roma 67, 56126 Pisa, Italy.ORCID 0000-0002-4061-0490

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Radiomics and artificial intelligence have the potential to become a valuable tool in clinical applications. Frequently, radiomic analyses through machine learning methods present issues caused by high dimensionality and multicollinearity, and redundant radiomic features are usually removed based on correlation analysis. We assessed the effect of preprocessing-in terms of voxel size resampling, discretization, and filtering-on correlation-based dimensionality reduction in radiomic features from cardiac T1 and T2 maps of patients with hypertrophic cardiomyopathy. For different combinations of preprocessing parameters, we performed a dimensionality reduction of radiomic features based on either Pearson's or Spearman's correlation coefficient, followed by the computation of the stability index. With varying resampling voxel size and discretization bin width, for both T1 and T2 maps, Pearson's and Spearman's dimensionality reduction produced a slightly different percentage of remaining radiomic features, with a relatively high stability index. For different filters, the remaining features' stability was instead relatively low. Overall, the percentage of eliminated radiomic features through correlation-based dimensionality reduction was more dependent on resampling voxel size and discretization bin width for textural features than for shape or first-order features. Notably, correlation-based dimensionality reduction was less sensitive to preprocessing when considering radiomic features from T2 compared with T1 maps.

Indexed as

cardiac magnetic resonance imagingcollinearitydimensionality reductiondiscretization bin widthfilteringhyperthophic cardiomyopathyradiomicsspatial resamplingT1 and T2 mapping

Identifiers

PMID36671652
PMCPMC9854492

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.