Evidence map›Paper›PMID 36671500›Full record

ArticleBiomolecules2023

Transcriptional Profiling Identifies Prognostic Gene Signatures for Conjunctival Extranodal Marginal Zone Lymphoma.

Julian Wolf, Thomas Reinhard, Rozina Ida Hajdu, Günther Schlunck, Claudia Auw-Haedrich, Clemens Lange

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Julian WolfEye Center, Medical Center, Faculty of Medicine, University of Freiburg, 79106 Freiburg, Germany.ORCID 0000-0002-3470-9697
Thomas ReinhardEye Center, Medical Center, Faculty of Medicine, University of Freiburg, 79106 Freiburg, Germany.
Rozina Ida HajduEye Center, Medical Center, Faculty of Medicine, University of Freiburg, 79106 Freiburg, Germany.
Günther SchlunckEye Center, Medical Center, Faculty of Medicine, University of Freiburg, 79106 Freiburg, Germany.
Claudia Auw-HaedrichEye Center, Medical Center, Faculty of Medicine, University of Freiburg, 79106 Freiburg, Germany.
Clemens LangeOphtha-Lab, Department of Ophthalmology, St. Franziskus Hospital, 48145 Münster, Germany.ORCID 0000-0002-2580-6823
University of Freiburg · DESemmelweis University · HUSt. Franziskus Hospital · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study characterizes the transcriptional profile and the cellular tumor microenvironment of conjunctival extranodal marginal zone lymphoma (EMZL) and identifies prognostically relevant biomarkers. Ten formalin-fixed and paraffin-embedded conjunctival EMZL and eight healthy conjunctival specimens were analyzed by Massive Analysis of cDNA Ends (MACE) RNA sequencing. The 3417 upregulated genes in conjunctival EMZL were involved in processes such as B cell proliferation and Rac protein signaling, whereas the 1188 downregulated genes contributed most significantly to oxidative phosphorylation and UV protection. The tumor microenvironment, as determined by deconvolution analysis, was mainly composed of multiple B cell subtypes which reflects the tumor's B cell lineage. However, several T cell types, including T helper 2 cells and regulatory T cells, as well as innate immune cell types, such as anti-inflammatory macrophages and plasmacytoid dendritic cells, were also strongly enriched in conjunctival EMZL. A 13-biomarker prognostic panel, including

Indexed as

Conjunctival NeoplasmsLymphoma, B-Cell, Marginal ZoneHumansPrognosisTumor Microenvironmentcellular tumor microenvironmentconjunctival lymphomaEMZLformalin-fixation and paraffin-embedding (FFPE)prognosisrecurrenceRNA sequencing

Identifiers

PMID36671500
PMCPMC9855408
OpenAlexW4313826086

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.