Evidence map›Paper›PMID 36669792›Full record

ArticleLife science alliance2023

Structural and functional characterization of TraI from pKM101 reveals basis for DNA processing.

Annika Breidenstein, Josy Ter Beek, Ronnie P-A Berntsson

Abstract read
In one paragraph

Article in Life science alliance, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Annika BreidensteinDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå, Sweden.ORCID 0000-0002-6664-5165
Josy Ter BeekDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå, Sweden josy.beek@umu.se.ORCID 0000-0003-4165-9277
Ronnie P-A BerntssonDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå, Sweden ronnie.berntsson@umu.se.ORCID 0000-0001-6848-322X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Type 4 secretion systems are large and versatile protein machineries that facilitate the spread of antibiotic resistance and other virulence factors via horizontal gene transfer. Conjugative type 4 secretion systems depend on relaxases to process the DNA in preparation for transport. TraI from the well-studied conjugative plasmid pKM101 is one such relaxase. Here, we report the crystal structure of the trans-esterase domain of TraI in complex with its substrate

Indexed as

Escherichia coli ProteinsDNAEsterasesPlasmidsType IV Secretion SystemsDNAEscherichia coli ProteinsEsterasesType IV Secretion Systems

Identifiers

PMID36669792
PMCPMC9868005

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.