Evidence map›Paper›PMID 36669479›Full record

ArticleMolecular cell2023

PGC-1α senses the CBC of pre-mRNA to dictate the fate of promoter-proximally paused RNAPII.

Xavier Rambout, Hana Cho, Roméo Blanc, Qing Lyu, Joseph M Miano, Joe V Chakkalakal, Geoffrey M Nelson, Hari K Yalamanchili, Karen Adelman, Lynne E Maquat

Open access · greenAbstract read
In one paragraph

Article in Molecular cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
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  5. Co-transcriptional gene regulation in eukaryotes and prokaryotes.Nature reviews. Molecular cell biology · 2024
    Review
  6. Review
  7. Cardiac maturation.Journal of molecular and cellular cardiology · 2024
    Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Xavier RamboutDepartment of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA; Center for RNA Biology, University of Rochester, Rochester, NY 14642, USA. Electronic address: xavier_rambout@urmc.rochester.edu.
Hana ChoDepartment of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA; Center for RNA Biology, University of Rochester, Rochester, NY 14642, USA.
Roméo BlancDepartment of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, NY 14642, USA.
Qing LyuDepartment of Medicine, Aab Cardiovascular Research Institute, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA.
Joseph M MianoDepartment of Medicine, Aab Cardiovascular Research Institute, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA.
Joe V ChakkalakalDepartment of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, NY 14642, USA; Department of Biomedical Engineering, University of Rochester Medical Center, Rochester, NY 14642, USA.
Geoffrey M NelsonDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Hari K YalamanchiliDepartment of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.
Karen AdelmanDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA.
Lynne E MaquatDepartment of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester Medical Center, Rochester, NY 14642, USA; Center for RNA Biology, University of Rochester, Rochester, NY 14642, USA. Electronic address: lynne_maquat@urmc.rochester.edu.
University of Rochester Medical Center · USHarvard University · USUniversity of Rochester · USBaylor College of Medicine · US

Funding

REGULATION OF SELENOPROTEIN RNA METABOLISMR01GM059614 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 1999 to 2022
$9.1M
Probing the specificity and activity of the metazoan Integrator complexR01GM134539 · NIGMS · HARVARD MEDICAL SCHOOL · PI Karen L Adelman, ERIC J WAGNER · 2019 to 2026
$4.7M
Nonsense-mediated mRNA decay and beyondR35GM149268 · NIGMS · UNIVERSITY OF ROCHESTER · PI Lynne E Maquat · 2023 to 2026
$3.1M
Regulation and Function of SRF in Vascular PathiobiologyR01HL147476 · NHLBI · UNIVERSITY OF ROCHESTER · PI MIANO, JOSEPH M · 2019 to 2022
$2.1M
Interrelationships between age-related skeletal muscle stem cell and NMJ declineR01AG051456 · NIA · UNIVERSITY OF ROCHESTER · PI CHAKKALAKAL, JOE · 2015 to 2019
$1.9M
Cellular Basis for Radiation induced acceleration of sarcopenia in juvenile cancer survivorsR01CA220467 · NCI · UNIVERSITY OF ROCHESTER · PI CHAKKALAKAL, JOE · 2017 to 2021
$1.8M
Role of a novel PGC-1α isoform in gene transcriptionR21AG075368 · NIA · UNIVERSITY OF ROCHESTER · PI RAMBOUT, XAVIER · 2022 to 2023
$424k
American Heart Association-American Stroke Association 18POST33960339American Heart Association-American Stroke Association 854100NCI NIH HHS R01 CA220467NHLBI NIH HHS R01 HL147476NIA NIH HHS R01 AG051456NIA NIH HHS R21 AG075368NIGMS NIH HHS R01 GM059614NIGMS NIH HHS R01 GM134539NIGMS NIH HHS R35 GM149268
6 · The paper itself

Abstract

PGC-1α is well established as a metazoan transcriptional coactivator of cellular adaptation in response to stress. However, the mechanisms by which PGC-1α activates gene transcription are incompletely understood. Here, we report that PGC-1α serves as a scaffold protein that physically and functionally connects the DNA-binding protein estrogen-related receptor α (ERRα), cap-binding protein 80 (CBP80), and Mediator to overcome promoter-proximal pausing of RNAPII and transcriptionally activate stress-response genes. We show that PGC-1α promotes pausing release in a two-arm mechanism (1) by recruiting the positive transcription elongation factor b (P-TEFb) and (2) by outcompeting the premature transcription termination complex Integrator. Using mice homozygous for five amino acid changes in the CBP80-binding motif (CBM) of PGC-1α that destroy CBM function, we show that efficient differentiation of primary myoblasts to myofibers and timely skeletal muscle regeneration after injury require PGC-1α binding to CBP80. Our findings reveal how PGC-1α activates stress-response gene transcription in a previously unanticipated pre-mRNA quality-control pathway.

Indexed as

RNA PrecursorsTranscription FactorsAnimalsDNA-Binding ProteinsMiceMuscle, SkeletalPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPromoter Regions, GeneticRNA Cap-Binding ProteinsRNA Polymerase IITranscription, GeneticDNA-Binding ProteinsPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPpargc1a protein, mouseRNA Cap-Binding ProteinsRNA Polymerase IIRNA PrecursorsTranscription Factorscap-binding complexCBP80ERRαgene transcriptionIntegratorinterferon signalingMediatormyogenesisPGC-1αpre-mRNP quality controlpromoter-proximal pausingP-TEFbskeletal muscle regeneration

Identifiers

PMID36669479
PMCPMC9951270
OpenAlexW4317678906

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.