Evidence map›Paper›PMID 36669106›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

MITE infestation accommodated by genome editing in the germline genome of the ciliate

Brandon K B Seah, Minakshi Singh, Christiane Emmerich, Aditi Singh, Christian Woehle, Bruno Huettel, Adam Byerly, Naomi A Stover, Mayumi Sugiura, Terue Harumoto and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Nuclear dualism without extensive DNA elimination in the ciliateProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. How ciliates got their nuclei.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Origins of genome-editing excisases as illuminated by the somatic genome of the ciliateProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Brandon K B SeahMax Planck Institute for Biology, Tuebingen 72072, Germany.ORCID 0000-0002-1878-4363
Minakshi SinghMax Planck Institute for Biology, Tuebingen 72072, Germany.ORCID 0000-0001-9674-6162
Christiane EmmerichMax Planck Institute for Biology, Tuebingen 72072, Germany.
Aditi SinghMax Planck Institute for Biology, Tuebingen 72072, Germany.ORCID 0000-0001-7840-9058
Christian WoehleMax Planck Genome Center Cologne, Max Planck Institute for Plant Breeding, Cologne 50829, Germany.
Bruno HuettelMax Planck Genome Center Cologne, Max Planck Institute for Plant Breeding, Cologne 50829, Germany.
Adam ByerlyDepartment of Computer Science and Information Systems, Bradley University, Peoria, IL 61625.
Naomi A StoverDepartment of Biology, Bradley University, Peoria, IL 61625.
Mayumi SugiuraDepartment of Chemistry, Biology, and Environmental Sciences, Faculty of Science, Nara Women's University, Nara 630-8506, Japan.
Terue HarumotoDepartment of Chemistry, Biology, and Environmental Sciences, Faculty of Science, Nara Women's University, Nara 630-8506, Japan.
Estienne C SwartMax Planck Institute for Biology, Tuebingen 72072, Germany.ORCID 0000-0002-1362-1602
Max Planck Institute for Biology · DEBradley University · USMax Planck Institute for Plant Breeding Research · DENara Women's University · JP

Funding

A Resource Center for Tetrahymena ThermophilaP40OD010964 · OD · WASHINGTON UNIVERSITY · PI DOUGLAS LEE CHALKER · 2012 to 2026
$6.5M
NIH HHS P40 OD010964
6 · The paper itself

Abstract

During their development following sexual conjugation, ciliates excise numerous internal eliminated sequences (IESs) from a copy of the germline genome to produce the functional somatic genome. Most IESs are thought to have originated from transposons, but the presumed homology is often obscured by sequence decay. To obtain more representative perspectives on the nature of IESs and ciliate genome editing, we assembled 40,000 IESs of

Indexed as

CiliophoraDNA Transposable ElementsGene EditingDNA, ProtozoanGerm CellsHumansTransposasesDNA, ProtozoanDNA Transposable ElementsTransposasesDNA eliminationmacronucleusmicronucleusmobile elementselfish gene

Identifiers

PMID36669106
PMCPMC9942856
OpenAlexW4317566763

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.