Evidence map›Paper›PMID 36669098›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate

Minakshi Singh, Brandon K B Seah, Christiane Emmerich, Aditi Singh, Christian Woehle, Bruno Huettel, Adam Byerly, Naomi A Stover, Mayumi Sugiura, Terue Harumoto and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. The cell biology and genome ofMolecular biology of the cell · 2025
    Article
  4. Article
  5. Nuclear dualism without extensive DNA elimination in the ciliateProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. How ciliates got their nuclei.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Minakshi SinghMax Planck Institute for Biology, Tuebingen, 72072 Germany.ORCID 0000-0001-9674-6162
Brandon K B SeahMax Planck Institute for Biology, Tuebingen, 72072 Germany.ORCID 0000-0002-1878-4363
Christiane EmmerichMax Planck Institute for Biology, Tuebingen, 72072 Germany.
Aditi SinghMax Planck Institute for Biology, Tuebingen, 72072 Germany.ORCID 0000-0001-7840-9058
Christian WoehleMax Planck Genome Center Cologne, Max Planck Institute for Plant Breeding, Cologne, 50829 Germany.
Bruno HuettelMax Planck Genome Center Cologne, Max Planck Institute for Plant Breeding, Cologne, 50829 Germany.
Adam ByerlyDepartment of Computer Science and Information Systems, Bradley University, Peoria, IL 61625.
Naomi A StoverDepartment of Biology, Bradley University, Peoria, IL 61625.
Mayumi SugiuraDepartment of Chemistry, Biology, and Environmental Sciences, Faculty of Science, Nara Women's University, Nara, 630-8506 Japan.
Terue HarumotoDepartment of Chemistry, Biology, and Environmental Sciences, Faculty of Science, Nara Women's University, Nara, 630-8506 Japan.
Estienne C SwartMax Planck Institute for Biology, Tuebingen, 72072 Germany.ORCID 0000-0002-1362-1602
Max Planck Institute for Biology · DEBradley University · USMax Planck Institute for Plant Breeding Research · DENara Women's University · JP

Funding

A Resource Center for Tetrahymena ThermophilaP40OD010964 · OD · WASHINGTON UNIVERSITY · PI DOUGLAS LEE CHALKER · 2012 to 2026
$6.5M
NIH HHS P40 OD010964
6 · The paper itself

Abstract

Massive DNA excision occurs regularly in ciliates, ubiquitous microbial eukaryotes with somatic and germline nuclei in the same cell. Tens of thousands of internally eliminated sequences (IESs) scattered throughout the ciliate germline genome are deleted during the development of the streamlined somatic genome. The genus

Indexed as

CiliophoraParamecium tetraureliaCell NucleusDNA, ProtozoanGene EditingGenomeDNA, Protozoannatural genome editingPiggyBacPiggyMactransposasetransposon

Identifiers

PMID36669098
PMCPMC9942806
OpenAlexW4317566680

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.