Evidence map›Paper›PMID 36669008›Full record

ArticleVeterinary sciences2022

Whole Genome Sequencing of SARS-CoV-2 in Cats and Dogs in South Korea in 2021.

Yeun-Kyung Shin, Oh-Kyu Kwon, Jinhwa Heo, Jinju Nah, Hae-Eun Kang, Yunhee Kang, In Jun Song, Ho-Kyung Sung

Open access · goldAbstract read
In one paragraph

Article in Veterinary sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yeun-Kyung ShinForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea.
Oh-Kyu KwonForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea.
Jinhwa HeoForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea.
Jinju NahForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea.
Hae-Eun KangForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon 39660, Republic of Korea.ORCID 0000-0002-6013-484X
Yunhee KangAnimal Health Center, Research Institute of Public Health and Environment, Seoul Metropolitan Government, Gwacheon 13818, Republic of Korea.
In Jun SongAnimal Welfare Division, Parks and Recreation Bureau, Seoul Metropolitan Government, Seoul 04524, Republic of Korea.
Ho-Kyung SungAnimal Welfare Division, Parks and Recreation Bureau, Seoul Metropolitan Government, Seoul 04524, Republic of Korea.
Animal and Plant Quarantine Agency · KRSeoul Metropolitan Government · KR

Funding

Animal and Plant Quarantine Agency B-1543085-2021-22
6 · The paper itself

Abstract

SARS-CoV-2 infections have caused unprecedented damage worldwide by affecting humans and various animals. The first reported animal infection was observed in a pet dog in Hong Kong in March 2020. 36 countries reported 692 SARS-CoV-2 infections in 25 different animal species by 31 August 2022. Most outbreaks were caused by contact with SARS-CoV-2 infected humans. In South Korea, the first SARS-CoV-2 infection in an animal was reported in a cat in February 2021. As of 31 December 2021, 74 dogs and 42 cats have been confirmed to have SARS-CoV-2 in South Korea. Here, we identified various SARS-CoV-2 genomic lineages in SARS-CoV-2 confirmed cats and dogs. Among the 40 animal samples sequenced for lineage identification, a total of eight Pango lineages (B.1.1.7 (Alpha variant), B.1.429 (Epsilon variant), B.1.470, B.1.497, B.1.619.1, B.1.620, AY.69 (Delta variant), and AY.122.5 (Delta variant)) were identified. The dominant lineages were AY.69 (Delta variant; 37.5%), B.1.497 (35.0%), and B.1.619.1 (12.5%). This study provides the first reported cases of six lineages (B.1.470, B.1.497, B.1.620, B.1.619.1, AY.69 (Delta variant)), and AY.122.5 (Delta variant) in cats and dogs. Our results emphasize the importance of monitoring SARS-CoV-2 in pets because they are dynamic hosts of variant Pango lineages of SARS-CoV-2.

Indexed as

animalscatsdogsgenomicSARS-CoV-2surveillancevariants

Identifiers

PMID36669008
PMCPMC9866686
OpenAlexW4313244626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.