Evidence map›Paper›PMID 36668673›Full record

ArticlePLoS computational biology2023

A new model of Notch signalling: Control of Notch receptor cis-inhibition via Notch ligand dimers.

Daipeng Chen, Zary Forghany, Xinxin Liu, Haijiang Wang, Roeland M H Merks, David A Baker

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Daipeng ChenSchool of Mathematics and Statistics, Xi'an Jiaotong University, Xi'an, China.ORCID 0000-0002-6000-0331
Zary ForghanyLeiden University Medical Center (LUMC), Department of Cell & Chemical Biology, Leiden, The Netherlands.
Xinxin LiuLeiden University Medical Center (LUMC), Department of Cell & Chemical Biology, Leiden, The Netherlands.ORCID 0000-0003-3722-9020
Haijiang WangLeiden University Medical Center (LUMC), Department of Cell & Chemical Biology, Leiden, The Netherlands.ORCID 0000-0003-4346-8693
Roeland M H MerksMathematical Institute, Leiden University, Leiden, The Netherlands.ORCID 0000-0002-6152-687X
David A BakerLeiden University Medical Center (LUMC), Department of Cell & Chemical Biology, Leiden, The Netherlands.ORCID 0000-0001-5533-2828
Leiden University Medical Center · NLLeiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All tissue development and replenishment relies upon the breaking of symmetries leading to the morphological and operational differentiation of progenitor cells into more specialized cells. One of the main engines driving this process is the Notch signal transduction pathway, a ubiquitous signalling system found in the vast majority of metazoan cell types characterized to date. Broadly speaking, Notch receptor activity is governed by a balance between two processes: 1) intercellular Notch transactivation triggered via interactions between receptors and ligands expressed in neighbouring cells; 2) intracellular cis inhibition caused by ligands binding to receptors within the same cell. Additionally, recent reports have also unveiled evidence of cis activation. Whilst context-dependent Notch receptor clustering has been hypothesized, to date, Notch signalling has been assumed to involve an interplay between receptor and ligand monomers. In this study, we demonstrate biochemically, through a mutational analysis of DLL4, both in vitro and in tissue culture cells, that Notch ligands can efficiently self-associate. We found that the membrane proximal EGF-like repeat of DLL4 was necessary and sufficient to promote oligomerization/dimerization. Mechanistically, our experimental evidence supports the view that DLL4 ligand dimerization is specifically required for cis-inhibition of Notch receptor activity. To further substantiate these findings, we have adapted and extended existing ordinary differential equation-based models of Notch signalling to take account of the ligand dimerization-dependent cis-inhibition reported here. Our new model faithfully recapitulates our experimental data and improves predictions based upon published data. Collectively, our work favours a model in which net output following Notch receptor/ligand binding results from ligand monomer-driven Notch receptor transactivation (and cis activation) counterposed by ligand dimer-mediated cis-inhibition.

Indexed as

Intercellular Signaling Peptides and ProteinsReceptors, NotchAnimalsCalcium-Binding ProteinsLigandsProtein MultimerizationReceptor, Notch1Signal TransductionCalcium-Binding ProteinsIntercellular Signaling Peptides and ProteinsLigandsReceptor, Notch1Receptors, Notch

Identifiers

PMID36668673
PMCPMC9891537
OpenAlexW4317600690

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.