Evidence map›Paper›PMID 36662838›Full record

ArticlePloS one2023

Better safe than sorry-Whole-genome sequencing indicates that missense variants are significant in susceptibility to COVID-19.

Dawid Słomian, Joanna Szyda, Paula Dobosz, Joanna Stojak, Anna Michalska-Foryszewska, Mateusz Sypniewski, Jakub Liu, Krzysztof Kotlarz, Tomasz Suchocki, Magdalena Mroczek and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Dawid SłomianNational Research Institute of Animal Production, Balice, Poland.ORCID 0000-0002-9037-7703
Joanna SzydaNational Research Institute of Animal Production, Balice, Poland.ORCID 0000-0001-9688-0193
Paula DoboszCentral Clinical Hospital of Ministry of the Interior and Administration in Warsaw, Warsaw, Poland.ORCID 0000-0002-5134-0975
Joanna StojakCentral Clinical Hospital of Ministry of the Interior and Administration in Warsaw, Warsaw, Poland.ORCID 0000-0003-2423-5026
Anna Michalska-ForyszewskaCentral Clinical Hospital of Ministry of the Interior and Administration in Warsaw, Warsaw, Poland.
Mateusz SypniewskiCentral Clinical Hospital of Ministry of the Interior and Administration in Warsaw, Warsaw, Poland.ORCID 0000-0002-0108-0255
Jakub LiuDepartment of Genetics, Biostatistics Group, Wrocław University of Environmental and Life Sciences, Wrocław, Poland.
Krzysztof KotlarzDepartment of Genetics, Biostatistics Group, Wrocław University of Environmental and Life Sciences, Wrocław, Poland.
Tomasz SuchockiNational Research Institute of Animal Production, Balice, Poland.
Magdalena MroczekCenter for Cardiovascular Genetics & Gene Diagnostics, Foundation for People with Rare Diseases, Schlieren-Zurich, Switzerland.ORCID 0000-0002-8731-0540
Maria StępieńDepartment of Infectious Diseases, Doctoral School, Medical University of Lublin, Lublin, Poland.ORCID 0000-0002-3377-4665
Paweł SztromwasserMNM Diagnostics, Poznań, Poland.
Zbigniew J KrólCentral Clinical Hospital of Ministry of the Interior and Administration in Warsaw, Warsaw, Poland.
Central Clinical Hospital · PLWrocław University of Environmental and Life Sciences · PLFoundation for People with Rare Diseases · CHMedical University of Lublin · PLMedical University of Warsaw · PLNational Research Institute of Animal Production · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Undoubtedly, genetic factors play an important role in susceptibility and resistance to COVID-19. In this study, we conducted the GWAS analysis. Out of 15,489,173 SNPs, we identified 18,191 significant SNPs for severe and 11,799 SNPs for resistant phenotype, showing that a great number of loci were significant in different COVID-19 representations. The majority of variants were synonymous (60.56% for severe, 58.46% for resistant phenotype) or located in introns (55.77% for severe, 59.83% for resistant phenotype). We identified the most significant SNPs for a severe outcome (in AJAP1 intron) and for COVID resistance (in FIG4 intron). We found no missense variants with a potential causal function on resistance to COVID-19; however, two missense variants were determined as significant a severe phenotype (in PM20D1 and LRP4 exons). None of the aforementioned SNPs and missense variants found in this study have been previously associated with COVID-19.

Indexed as

COVID-19Genome-Wide Association StudyExonsFlavoproteinsGenetic Predisposition to DiseaseHumansMutation, MissensePhenotypePhosphoric Monoester HydrolasesPolymorphism, Single NucleotideFIG4 protein, humanFlavoproteinsPhosphoric Monoester Hydrolases

Identifiers

PMID36662838
PMCPMC9858061
OpenAlexW4317602004

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.