Evidence map›Paper›PMID 36662812›Full record

ArticleCancer research2023

SWI/SNF Blockade Disrupts PU.1-Directed Enhancer Programs in Normal Hematopoietic Cells and Acute Myeloid Leukemia.

Courtney Chambers, Katerina Cermakova, Yuen San Chan, Kristen Kurtz, Katharina Wohlan, Andrew Henry Lewis, Christiana Wang, Anh Pham, Milan Dejmek, Michal Sala and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Electrochemical impedance spectroscopy unmasks high-risk atherosclerotic features in human coronary artery disease.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  18. Chromatin remodellers as therapeutic targets.Nature reviews. Drug discovery · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Courtney ChambersDepartment of Molecular and Cellular Biology, Center for Precision Environmental Health, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-2754-8282
Katerina CermakovaDepartment of Molecular and Cellular Biology, Center for Precision Environmental Health, Baylor College of Medicine, Houston, Texas.ORCID 0000-0003-3006-2213
Yuen San ChanDepartment of Molecular and Cellular Biology, Center for Precision Environmental Health, Baylor College of Medicine, Houston, Texas.ORCID 0000-0003-0467-7580
Kristen KurtzDepartment of Pediatrics, Baylor College of Medicine and Texas Children's Hospital, Houston, Texas.ORCID 0000-0001-5271-5196
Katharina WohlanDepartment of Molecular and Cellular Biology, Center for Precision Environmental Health, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-9147-4070
Andrew Henry LewisDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-4586-1387
Christiana WangGenetics and Genomics Graduate Program, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-5275-271X
Anh PhamDepartment of Bioengineering, Rice University, Houston, Texas.ORCID 0000-0002-5214-9275
Milan DejmekInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0002-8195-971X
Michal SalaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0003-1554-6906
Mario Loeza CabreraDepartment of Molecular and Cellular Biology, Center for Precision Environmental Health, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-2397-7573
Rogelio AguilarStem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-3569-0713
Radim NenckaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0001-6167-0380
H Daniel LacorazzaDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, Texas.ORCID 0000-0003-0660-617X
Rachel E RauDepartment of Pediatrics, Baylor College of Medicine and Texas Children's Hospital, Houston, Texas.ORCID 0000-0003-4096-6603
H Courtney HodgesDepartment of Molecular and Cellular Biology, Center for Precision Environmental Health, Baylor College of Medicine, Houston, Texas.ORCID 0000-0003-4441-497X
Baylor College of Medicine · USInstitute of Organic Chemistry · PLID Genomics (United States) · USRice University · USTexas Children's Hospital · USThe University of Texas MD Anderson Cancer Center · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Michael M Ittmann · 2007 to 2026
$73.9M
VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
Novel cellular regulatory mechanisms governing SWI/SNF activityR35GM137996 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Hamilton Courtney Hodges · 2020 to 2026
$2.9M
Mechanisms and small-molecule targeting of SWI/SNF activity in neuroblastomaR01CA272769 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Hamilton Courtney Hodges · 2022 to 2026
$2.3M
Mechanisms of KLF4 suppression in pediatric leukemiaR01CA207086 · NCI · BAYLOR COLLEGE OF MEDICINE · PI LACORAZZA, DANIEL · 2017 to 2021
$1.8M
High Throughput Genomic Sequencer at BCM Core FacilityS10OD023469 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2017 to 2017
$600k
BD Biosciences Special Order LSRIIS10RR024574 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI LUMPKIN, ELLEN A · 2009 to 2009
$430k
Acquisition of the Fluidigm system to accelerate functional genomics researchS10OD018033 · OD · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2014 to 2014
$396k
Acquisition of 10X Genomics Chromium Instrument to Accelerate Genomic and Single Cell Transcriptomic ResearchS10OD025240 · OD · BAYLOR COLLEGE OF MEDICINE · PI DODDAPANENI, HARSHA VARDHAN · 2018 to 2018
$125k
Regulation of IL-4 macrophage polarization by SWI/SNF family complexesF31AI161906 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI CHAMBERS, COURTNEY · 2022 to 2022
$40k
NCI NIH HHS P30 CA125123NCI NIH HHS R01 CA207086NCI NIH HHS R01 CA272769NCRR NIH HHS S10 RR024574NEI NIH HHS P30 EY002520NIAID NIH HHS F31 AI161906NIGMS NIH HHS R35 GM137996NIH HHS S10 OD018033NIH HHS S10 OD023469NIH HHS S10 OD025240
6 · The paper itself

Abstract

In acute myeloid leukemia (AML), SWI/SNF chromatin remodeling complexes sustain leukemic identity by driving high levels of MYC. Previous studies have implicated the hematopoietic transcription factor PU.1 (SPI1) as an important target of SWI/SNF inhibition, but PU.1 is widely regarded to have pioneer-like activity. As a result, many questions have remained regarding the interplay between PU.1 and SWI/SNF in AML as well as normal hematopoiesis. Here we found that PU.1 binds to most of its targets in a SWI/SNF-independent manner and recruits SWI/SNF to promote accessibility for other AML core regulatory factors, including RUNX1, LMO2, and MEIS1. SWI/SNF inhibition in AML cells reduced DNA accessibility and binding of these factors at PU.1 sites and redistributed PU.1 to promoters. Analysis of nontumor hematopoietic cells revealed that similar effects also impair PU.1-dependent B-cell and monocyte populations. Nevertheless, SWI/SNF inhibition induced profound therapeutic response in an immunocompetent AML mouse model as well as in primary human AML samples. In vivo, SWI/SNF inhibition promoted leukemic differentiation and reduced the leukemic stem cell burden in bone marrow but also induced leukopenia. These results reveal a variable therapeutic window for SWI/SNF blockade in AML and highlight important off-tumor effects of such therapies in immunocompetent settings. SIGNIFICANCE: Disruption of PU.1-directed enhancer programs upon SWI/SNF inhibition causes differentiation of AML cells and induces leukopenia of PU.1-dependent B cells and monocytes, revealing the on- and off-tumor effects of SWI/SNF blockade.

Indexed as

Leukemia, Myeloid, AcuteLeukopeniaAnimalsBone MarrowCell DifferentiationHumansMicePromoter Regions, Genetic

Identifiers

PMID36662812
PMCPMC10071820
OpenAlexW4317567911

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.