Evidence map›Paper›PMID 36661314›Full record

ArticleJournal of chemical information and modeling2023

Effect of the QM Size, Basis Set, and Polarization on QM/MM Interaction Energy Decomposition Analysis.

Álvaro Pérez-Barcia, Gustavo Cárdenas, Juan J Nogueira, Marcos Mandado

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Article in Journal of chemical information and modeling, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

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7citing papers in PubMed
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1 · What the graph read from it

What it found

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Álvaro Pérez-BarciaDepartment of Physical Chemistry, University of Vigo, Lagoas-Marcosende s\n, ES-36310-Vigo, Galicia, Spain.
Gustavo CárdenasDepartment of Chemistry, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
Juan J NogueiraDepartment of Chemistry, Universidad Autónoma de Madrid, 28049, Madrid, Spain.ORCID 0000-0001-7419-5670
Marcos MandadoDepartment of Physical Chemistry, University of Vigo, Lagoas-Marcosende s\n, ES-36310-Vigo, Galicia, Spain.ORCID 0000-0001-9688-2658

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herein, an Energy Decomposition Analysis (EDA) scheme extended to the framework of QM/MM calculations in the context of electrostatic embeddings (QM/MM-EDA) including atomic charges and dipoles is applied to assess the effect of the QM region size on the convergence of the different interaction energy components, namely, electrostatic, Pauli, and polarization, for cationic, anionic, and neutral systems interacting with a strong polar environment (water). Significant improvements are found when the bulk solvent environment is described by a MM potential in the EDA scheme as compared to pure QM calculations that neglect bulk solvation. The predominant electrostatic interaction requires sizable QM regions. The results reported here show that it is necessary to include a surprisingly large number of water molecules in the QM region to obtain converged values for this energy term, contrary to most cluster models often employed in the literature. Both the improvement of the QM wave function by means of a larger basis set and the introduction of polarization into the MM region through a polarizable force field do not translate to a faster convergence with the QM region size, but they lead to better results for the different interaction energy components. The results obtained in this work provide insight into the effect of each energy component on the convergence of the solute-solvent interaction energy with the QM region size. This information can be used to improve the MM FFs and embedding schemes employed in QM/MM calculations of solvated systems.

Indexed as

Quantum TheoryWaterSolutionsSolventsStatic ElectricitySolutionsSolventsWater

Identifiers

PMID36661314
PMCPMC9930123

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.