Evidence map›Paper›PMID 36661183›Full record

ArticleCPT: pharmacometrics & systems pharmacology2023

Bayesian PBPK modeling using R/Stan/Torsten and Julia/SciML/Turing.Jl.

Ahmed Elmokadem, Yi Zhang, Timothy Knab, Eric Jordie, William R Gillespie

Abstract read
In one paragraph

Article in CPT: pharmacometrics & systems pharmacology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Best Practices in Physiologically Based Pharmacokinetic (PBPK) Modeling.CPT: pharmacometrics & systems pharmacology · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Bayesian inference informed by parameter subset selection for a minimal PBPK brain model.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2025
    Article
  6. Article
  7. Bayesian PBPK modeling using R/Stan/Torsten and Julia/SciML/Turing.Jl.CPT: pharmacometrics & systems pharmacology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ahmed ElmokademMetrum Research Group, Tariffville, Connecticut, USA.ORCID 0000-0002-2412-4986
Yi ZhangSage Therapeutics, Inc., Cambridge, Massachusetts, USA.
Timothy KnabMetrum Research Group, Tariffville, Connecticut, USA.
Eric JordieMetrum Research Group, Tariffville, Connecticut, USA.
William R GillespieMetrum Research Group, Tariffville, Connecticut, USA.ORCID 0000-0002-4560-6482

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Physiologically-based pharmacokinetic (PBPK) models are mechanistic models that are built based on an investigator's prior knowledge of the in vivo system of interest. Bayesian inference incorporates an investigator's prior knowledge of parameters while using the data to update this knowledge. As such, Bayesian tools are well-suited to infer PBPK model parameters using the strong prior knowledge available while quantifying the uncertainty on these parameters. This tutorial demonstrates a full population Bayesian PBPK analysis framework using R/Stan/Torsten and Julia/SciML/Turing.jl.

Indexed as

Models, BiologicalBayes TheoremHumans

Identifiers

PMID36661183
PMCPMC10014045

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.