Evidence map›Paper›PMID 36660900›Full record

ArticleBone & joint research2023

Transcriptome-wide association study identifies new susceptibility genes for degenerative cervical spondylosis.

Jiawen Xu, Haibo Si, Yi Zeng, Yuangang Wu, Shaoyun Zhang, Yuan Liu, Mingyang Li, Bin Shen

Open access · goldAbstract read
In one paragraph

Article in Bone & joint research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jiawen XuDepartment of Orthopedics, Sichuan University West China Hospital, Chengdu, China.
Haibo SiDepartment of Orthopedics, Sichuan University West China Hospital, Chengdu, China.
Yi ZengDepartment of Orthopedics, Sichuan University West China Hospital, Chengdu, China.
Yuangang WuDepartment of Orthopedics, Sichuan University West China Hospital, Chengdu, China.
Shaoyun ZhangDepartment of Orthopedics, Sichuan University West China Hospital, Chengdu, China.ORCID 0000-0002-1630-4346
Yuan LiuDepartment of Orthopedics, Sichuan University West China Hospital, Chengdu, China.
Mingyang LiDepartment of Orthopedics, Sichuan University West China Hospital, Chengdu, China.
Bin ShenDepartment of Orthopedics, Sichuan University West China Hospital, Chengdu, China.ORCID 0000-0002-9632-7221
Sichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimsDegenerative cervical spondylosis (DCS) is a common musculoskeletal disease that encompasses a wide range of progressive degenerative changes and affects all components of the cervical spine. DCS imposes very large social and economic burdens. However, its genetic basis remains elusive.

methodsPredicted whole-blood and skeletal muscle gene expression and genome-wide association study (GWAS) data from a DCS database were integrated, and functional summary-based imputation (FUSION) software was used on the integrated data. A transcriptome-wide association study (TWAS) was conducted using FUSION software to assess the association between predicted gene expression and DCS risk. The TWAS-identified genes were verified via comparison with differentially expressed genes (DEGs) in DCS RNA expression profiles in the Gene Expression Omnibus (GEO) (Accession Number: GSE153761). The Functional Mapping and Annotation (FUMA) tool for genome-wide association studies and Meta tools were used for gene functional enrichment and annotation analysis.

resultsThe TWAS detected 420 DCS genes with p < 0.05 in skeletal muscle, such as ribosomal protein S15A (

conclusionOur results identify putative susceptibility genes; these findings provide new ideas for exploration of the genetic mechanism of DCS development and new targets for preclinical intervention and clinical treatment.Cite this article:

Indexed as

bloodcervical spinecervical spondylosisDegenerative cervical spondylosisdegenerative diseasesDifferentially expressed genesextracellular matrixGene ExpressionGene ontologymusculoskeletal diseasesPathway enrichment analysisRNAskeletal musclesusceptibility genesTranscriptome-wide association study

Identifiers

PMID36660900
PMCPMC9872045
OpenAlexW4317535283

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.