Evidence map›Paper›PMID 36658613›Full record

ArticleBMC research notes2023

Differential identification of Mannheimia haemolytica genotypes 1 and 2 using colorimetric loop-mediated isothermal amplification.

Rohana P Dassanayake, Michael L Clawson, Fred M Tatum, Robert E Briggs, Bryan S Kaplan, Eduardo Casas

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Microbiology spectrum · 2026
    Article
  2. Molecular Epidemiology and Antibiotic Resistance of Sheep-DerivedAnimals : an open access journal from MDPI · 2025
    Article
  3. Article
  4. Article
  5. Exploring the diagnostic landscape ofFrontiers in microbiology · 2025
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Rohana P DassanayakeUnited States Department of Agriculture, National Animal Disease Center, Ruminant Diseases and Immunology Research Unit, Agricultural Research Service, Ames, IA, 50010, USA. rohana.dassanayake@usda.gov.
Michael L ClawsonUnited States Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, Animal Health Genomic Research Unit, Clay Center, NE, 68933, USA.
Fred M TatumUnited States Department of Agriculture, National Animal Disease Center, Ruminant Diseases and Immunology Research Unit, Agricultural Research Service, Ames, IA, 50010, USA.
Robert E BriggsUnited States Department of Agriculture, National Animal Disease Center, Ruminant Diseases and Immunology Research Unit, Agricultural Research Service, Ames, IA, 50010, USA.
Bryan S KaplanUnited States Department of Agriculture, National Animal Disease Center, Ruminant Diseases and Immunology Research Unit, Agricultural Research Service, Ames, IA, 50010, USA.
Eduardo CasasUnited States Department of Agriculture, National Animal Disease Center, Ruminant Diseases and Immunology Research Unit, Agricultural Research Service, Ames, IA, 50010, USA.
Agricultural Research Service · USNational Animal Disease Center · USUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveMannheimia haemolytica is the primary bacterial pathogen associated with bovine respiratory disease complex (BRDC). While M. haemolytica has been subdivided into 12 capsular serotypes (ST), ST1, ST2 and ST6 are commonly isolated from cattle. More recently, M. haemolytica strains isolated from North American cattle have been classified into genotypes 1 (ST2) and 2 (ST1 and ST6). Of the two genotypes, genotype 1 strains are frequently isolated from healthy animals whereas, genotype 2 strains are predominantly isolated from BRDC animals. However, isolation of both genotypes from pneumonic lung samples can complicate diagnosis. Therefore, the aim of this study was to develop a colorimetric loop-mediated isothermal amplification (LAMP) assay to differentiate M. haemolytica genotypes.

resultsThe genotype specificity of the LAMP was tested using purified genomic DNA from 22 M. haemolytica strains (10 genotype 1, 12 genotype 2) and strains from four related Pasteurellaceae species; Bibersteinia trehalosi, Mannheimia glucosida, Pasteurella multocida, and Histophilus somni. Genotype 1 (adhesin pseudogene B1) specific-LAMP reactions amplified DNA only from genotype 1 strains while genotype 2 (adhesin G) reactions amplified DNA only from genotype 2 strains. The overall detection sensitivity and specificity of the newly developed colorimetric LAMP assay for each genotype were 100%. The limits of detection of two LAMP assays were 1-100 target gene copies per reaction. LAMP primers designed in this study may help the differential identification of M. haemolytica genotypes 1 and 2.

Indexed as

Mannheimia haemolyticaAnimalsCattleColorimetryGenotypeInterleukin-1 Receptor-Like 1 ProteinMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesInterleukin-1 Receptor-Like 1 ProteinAdhesinsGenotypesLAMPLeukotoxinLoop-mediated isothermal amplificationMannheimia haemolyticaSerotypes

Identifiers

PMID36658613
PMCPMC9850709
OpenAlexW4317510610

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.